YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74222740, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDTDIKRLL YTNLLCVFSI FLSIFIPSFF VDNFSVLEAH LTWLCICSAS VTTVNLLSYL  60
   61 VVKPNVSSKR SSLSHKVTRA LKCCVFFLMS CFLLHIIFVL YGAPLIELVL ETFLFAVVLS 120
  121 TFTTVPCLCL LGPNLKAWLR VFSRNGVTSI WENSLQITTI SSFTGAWLGA FPIPLDWERP 180
  181 WQVWPISCTL GATFGYVAGL VISPLWIYWN RKQLTYKNN

Type	Start	End	Confidence
Cytoplasmic	1	8	0.99
Transmembrane Helix	9	31	0.93
Non-Cytoplasmic	32	38	0.95
Transmembrane Helix	39	62	0.94
Cytoplasmic	63	82	0.91
Transmembrane Helix	83	103	0.94
Non-Cytoplasmic	104	111	0.80
Transmembrane Helix	112	134	0.91
Cytoplasmic	135	152	0.87
Transmembrane Helix	153	173	0.89
Non-Cytoplasmic	174	185	0.80
Transmembrane Helix	186	209	0.88
Cytoplasmic	210	219	0.97