YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33620334
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.97
Transmembrane Helix	37	58	0.87
Non-Cytoplasmic	59	71	0.80
Transmembrane Helix	72	91	0.94
Cytoplasmic	92	106	0.86
Transmembrane Helix	107	126	0.96
Non-Cytoplasmic	127	143	0.87
Transmembrane Helix	144	163	0.89
Cytoplasmic	164	183	0.89
Transmembrane Helix	184	204	0.93
Non-Cytoplasmic	205	229	0.86
Transmembrane Helix	230	249	0.92
Cytoplasmic	250	285	0.96
Transmembrane Helix	286	306	0.92
Non-Cytoplasmic	307	332	0.94
Transmembrane Helix	333	355	0.87
Cytoplasmic	356	364	0.82
Transmembrane Helix	365	386	0.92
Non-Cytoplasmic	387	410	0.90
Transmembrane Helix	411	432	0.87
Cytoplasmic	433	446	0.64
Transmembrane Helix	447	467	0.84
Non-Cytoplasmic	468	479	0.76
Transmembrane Helix	480	501	0.93
Cytoplasmic	502	520	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPFSSTKQN HNNNNTLTKP SLHVESPPLE PSPLRKIIVV ASIAAGVQFG WALQLSLLTP  60
   61 YVQLLGIPHT WAAYIWLCGP ISGMLVQPIV GYHSDRCTSR FGRRRPFIAA GSFAVAIAVF 120
  121 LIGYAADLGH SFGDDLSKKV RPRAIGIFVV GFWILDVANN MLQGPCRALL GDLCAGNHQK 180
  181 TRNANAFFSF FMAVGNVLGY AAGAYSKLYH VFPFTKTTAC DVYCANLKSC FFLSIALLTT 240
  241 LATAALVYVK EVPLSPEKAV IDSDDNGGMP CFGQLFGAFR ELKRPMWILL LVTCLNWIAW 300
  301 FPFLLFDTDW MGREVYEGTV GEGKAYDRGV RAGALGLMLN SVVLGATSLG VEVLARGVGG 360
  361 VKRLWGIVNF LLAVCLAMTV LVTKMAQHSR QYTLLPNAHQ EPLPPPAAVK AGALALFSLL 420
  421 GIPLAITYSI PFALASIFSS TSGAGQGLSL GVLNLAIVIP QMVVSVISGP WDALFGGGNL 480
  481 PAFVVGAVAA AASGILSIIL LPSPPPDLAK AATAAGGGFH