YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|208612575, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTNLFSVFD PSAIFNFSLN WLSTFLGLLM IPSIYWLMPS RYNIMWNSIL LTLHKEFKTL  60
   61 LGPSGHNGST FIFISLFSLI LFNNFMGLFP YIFTSTSHLT LTLSLALPLW LCFMLYGWIN 120
  121 HTQHMFAHLV PQGTPAILMP FMVCIETISN IIRPGTLAVR LTANMIAGHL LLTLLGNTGP 180
  181 SMSYMLVTFL LMAQIALLVL ESAVAMIQSY VFAVLSTLYS SEVN

Type	Start	End	Confidence
Cytoplasmic	1	16	0.81
Transmembrane Helix	17	38	0.91
Non-Cytoplasmic	39	69	0.83
Transmembrane Helix	70	92	0.87
Cytoplasmic	93	98	0.72
Transmembrane Helix	99	119	0.93
Non-Cytoplasmic	120	127	0.71
Transmembrane Helix	128	149	0.79
Cytoplasmic	150	156	0.63
Transmembrane Helix	157	179	0.74
Non-Cytoplasmic	180	183	0.48
Transmembrane Helix	184	214	0.71
Cytoplasmic	215	224	0.67