YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1524002
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.87
Transmembrane Helix	8	28	0.87
Non-Cytoplasmic	29	90	0.85
Transmembrane Helix	91	112	0.77
Cytoplasmic	113	118	0.84
Transmembrane Helix	119	140	0.90
Non-Cytoplasmic	141	150	0.62
Transmembrane Helix	151	169	0.91
Cytoplasmic	170	179	0.87
Transmembrane Helix	180	202	0.92
Non-Cytoplasmic	203	208	0.92
Transmembrane Helix	209	229	0.97
Cytoplasmic	230	272	0.98
Transmembrane Helix	273	294	0.90
Non-Cytoplasmic	295	315	0.81
Transmembrane Helix	316	335	0.90
Cytoplasmic	336	347	0.86
Transmembrane Helix	348	367	0.87
Non-Cytoplasmic	368	372	0.64
Transmembrane Helix	373	394	0.81
Cytoplasmic	395	402	0.65
Transmembrane Helix	403	426	0.88
Non-Cytoplasmic	427	441	0.68
Transmembrane Helix	442	460	0.97
Cytoplasmic	461	524	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQVEARTVL WYMTFIGFIV NYMIRINLNI TIVDMIAGKG AITSNETHEN STDLAALAEM  60
   61 NERFSLERWF LDWANIPYEK NGFHWNEKQQ GALLGSFFWA HWTLQIPGGI LATKYGTKLV 120
  121 FGWSNGIGVF CCFLIPIVSY WSYTGLIILR VFQGWITGLA WPSMHVLTAK WIPPNERSKF 180
  181 VSAYLGSSVG VALFYPIFGY IIDWTRWEWV YYICGIVGTL WFIAWQFLVF DSPAEHPRIA 240
  241 DSERKFIEKS LGASIQGSKG PTPWKAIATS RPVWLNVVAQ WGGIWGLFTL MTHAPTYFRL 300
  301 IHHWNIRATG FLSGLPHLMR MLFAYVFSIF ADYLLRTDKM SRTNVRKLAT FICCGTKGLI 360
  361 VLALAYFGYN ATAAIVLVTV ATMLHGAVSS GPLASMVDLS PNYAGIVLGV SGMIGGMPGF 420
  421 ISPFIVGQLT HNNQTIDAWK NVFLLTSLML TGSGILYVLF SESKLQPWNS GCHQLPDSGL 480
  481 KELQNLGRDQ DDEEEKKPLK SDHDKETPIV AEQETKTKSD CDGK