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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MSL3_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMRTVALPL SHDLNVHKIH EASGFHNSAA GKNRVYLTRT GLSSCATRQD VWSLQLLESL  60
   61 SGSIVPVSSR CNAFVCRSAL SPGNGNEGPI LKSTAVIFTR VYDALGGNPH LVKLIPAVGI 120
  121 LAFATWGLRP LLRLARTTLF EKGNDANSQK SSTQYIVVSY LQPLLLWSGA ILLCRTLDPI 180
  181 VLPSSAGQAI KQRLLIFARS ISTVLAFSCC LSSLLQQVQK FFMETNNPAD TRNMGFSFAG 240
  241 KAVYTAAWVA AASLFMELLG FSTQKWLTAG GLGTVLLTLA GREILTNFLS SIMIHATRPF 300
  301 VLNEWIQTKI GGYEVSGTVE QVGWWSPTII RGDDREAVHI PNHQFSVNIV RNLTQKTHWR 360
  361 IKTHLAISHL DVSKINNIVA DMRKVLSKNP QIEQQKIHRR VFLEDIDPEN QALRILISCF 420
  421 VKTSRFEEYL CVKEAVLLDL LTVIRHHGAR LATPIRTVQR MRNEAEVDTA GFSDIVFNQA 480
  481 AMNRRYMLIE PSYKINSDDN SKSPSPSPGQ KSPSPGQKSE ERDLQEEPSE TKAETENNGS 540
  541 VPVSNAKKEN QKAALGSNSN TGTKGSSTST SDQPVAQKSE EKKKESVGDP HKAEKDEVSD 600
  601 DEATIEQTLK SKAKQGSEKN NGESKARDGG GSGTSSLLEE NLVLGVALDG SKRTLPIDEE 660
  661 HKASGALMDS EELGIGSE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle