YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21914408
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKGGTKCI KYLLFGFNFI FWLAGIAVLA IGLWLRFDSQ TKSIFEQENN NSSFYTGVYI  60
   61 LIGAGALMMV VGFLGCCGAV QESQCMLGLF FGFLLVIFAI EIPAAIWGYS HKDQVIKEVQ 120
  121 DFYRDTYNKL KGKDDPQRET LKAIHYALDC CGLMGGVEQL LADICPQKDV LSSLPMKPCP 180
  181 EAIKEVFQNK FHIIGAVGIG IAVVMIFGMI FSMILCCAIR RSREMV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	35	0.90
Non-Cytoplasmic	36	55	0.93
Transmembrane Helix	56	77	0.93
Cytoplasmic	78	86	0.76
Transmembrane Helix	87	107	0.94
Non-Cytoplasmic	108	195	0.97
Transmembrane Helix	196	218	0.92
Cytoplasmic	219	226	0.93