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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|21913144
Protein type: Transmembrane
Type Confidence: 0.79
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCKRKSTNLD VPEASSQSSL PDQGSSIPAN KELGREILMK PSNSAPPRII MPAGSDGSSG  60
   61 VVLQKKRRVV RACDRCRKLK IKCSGDLPCI HCTVYSYECT YDQPSRAKRK NTTANAGSPS 120
  121 GPSANSQHPH LPTNSLEVMA RMADRLKLYD DILHRLLPDI KLTDLNDNPK PINPMKLLTA 180
  181 MNKLREKSCD ETKSSSKTIA EEYERLPDVP LPTLPSVPKP APSTTAVKTH ESPSERSHFC 240
  241 SPHGGGPHQG IDGSYESSMG KEIKIILPSR EVALRLITKT WENACVLFRF YHRPAFIEDL 300
  301 NELYDTDPSQ YTNKQQRFLP LVYSVMACGA LFLKSDEQTN GSKNGEPTPE NEVFEDEGYR 360
  361 YFIAARKLID ITDTRDTYGI QTIVMLIIFL QCSARLSTCY AYIGIALRAA LREGLHRKLD 420
  421 YPFNPIELEI RKRLFWTIYK MDIYVNTMLG LPRTISEDDF DQDMPIELDD ENITVDGYRF 480
  481 EKQGDRLSSS GIANAHTRLI FIMKKIVTKL YPIKPRKIEN GRRPELMTHD IVYQLEIDLQ 540
  541 DWMNSLPLEL KPGVEPSSQY LKANRLLHIS YLHVKIILYR PFIHYLSSDH VNRPKSSNDL 600
  601 KCIEKAKNCI NVARIVVKLA EDMINKNMLS GSYWFSIYTI FFSVACLVYY VHFAPPVTSS 660
  661 GNFDPEYIAI KKDAESGKRV LDILKDSSMA ARRTYNILNA LFEELNRKTA NASISHEPPN 720
  721 SHFLTPQVGK SQFERDNHKK DQMAIPLPPQ NMRPPEYVQQ PFNGYSKMEN SEINNIVNGV 780
  781 NFIDGVSTGI NLNLPSNSEV EDVPSSISPP DQNSKYKYVP GPMDQLDMKI FGRFLPPYML 840
  841 NSNQQSTDNT PEPEPYPEQY QEPENEPQNG TIFGSIPSGL STVSQSQQNS KGFTGLPPDY 900
  901 QGPPKRYDFE DMFYNDWSAG PPNDFNQKS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle