YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70887741, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGRVLTTF RDMMHATTVA QSIMTSMNQS SRASCEISHE ADRVPLMVLY IVVFIIGLPA  60
   61 NLATVYLTLH QVCRKNVLGI YLLSLSICDL TYLFTLPMWT VYVSRNHEWP WSSLACKITG 120
  121 FVFFNNMYIS IFLLCCVSID RYVAVVYAIE SRGLRQKRIA AFVSFLIFIV VGLGHSPVFI 180
  181 MREGQVEEGS HRCFEPSQST TLVTGFNYAR VCIGFCIPLA ILIFTNRAIL ANVQASTGLQ 240
  241 PHQKVKVRYL AVAVVALFLI CFAPYHIILL MRAVIFHFPN LQGKCHFEQH IYTPYKISLG 300
  301 LSTFNSAINP ILYVLSSNNI RQEIRRGITS VCDRVLSSQR STHSSQHNMH SSRSNSEPFP 360
  361 IKGGQMRTVC PTA

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.79
Transmembrane Helix	47	69	0.91
Cytoplasmic	70	76	0.91
Transmembrane Helix	77	101	0.86
Non-Cytoplasmic	102	120	0.86
Transmembrane Helix	121	144	0.76
Cytoplasmic	145	158	0.85
Transmembrane Helix	159	179	0.94
Non-Cytoplasmic	180	205	0.95
Transmembrane Helix	206	230	0.85
Cytoplasmic	231	246	0.96
Transmembrane Helix	247	269	0.92
Non-Cytoplasmic	270	296	0.93
Transmembrane Helix	297	316	0.72
Cytoplasmic	317	373	0.75