YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147907078, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	216	0.99
Transmembrane Helix	217	240	0.92
Non-Cytoplasmic	241	258	0.90
Transmembrane Helix	259	280	0.90
Cytoplasmic	281	296	0.90
Transmembrane Helix	297	318	0.89
Non-Cytoplasmic	319	329	0.85
Transmembrane Helix	330	350	0.93
Cytoplasmic	351	390	0.95
Transmembrane Helix	391	411	0.83
Non-Cytoplasmic	412	421	0.71
Transmembrane Helix	422	441	0.79
Cytoplasmic	442	455	0.78
Transmembrane Helix	456	475	0.91
Non-Cytoplasmic	476	489	0.75
Transmembrane Helix	490	509	0.71
Cytoplasmic	510	526	0.78
Transmembrane Helix	527	548	0.66
Non-Cytoplasmic	549	556	0.78
Transmembrane Helix	557	581	0.84
Cytoplasmic	582	620	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKMPGQKY EIGETVMGRW PGSSLYYEVQ VVGFNSKSQE YKVLYKDGTD LDLKEGDIKR  60
   61 QNIFNRKRSS SPSRRRSRSR SRSPGRSRSP ARRRSPLRPS SPGRPAKNGH QSSLIRDIKK 120
  121 GDTLQVHLTP VKLQDYSTGK HNGEPEGFEK ITTRHRATPV KAIELMEEEL ERNEKVLHYS 180
  181 LSPRQESSIP TGIVLADSVP TETLPEMTEK NAENPKLAFG GAIGCFLFMV CVPALLYYLL 240
  241 VVCGQQYTSG YPFVELLDIQ VFGFFVLWTL LQVILYLLPL GKVVDGAQLK NGKRLKYRIS 300
  301 GCSAFFLTAA IMAGMKYYYE INFLYIFEHY LQFAASATLF SFLLSIYLYV RSYKVPNEEL 360
  361 SWAANSGNFI YKFVMGREIN PRIGNLDLKV FVVIRQALMS WVLINLIMLF AEMKVHKWDE 420
  421 PSLSMILVNS FQLLYVLDGF WNEEYFLMSP DIVRDGFGFL LAFGSLAVAP FTYSLQTYYL 480
  481 VNNPVDLSRQ AASAIVALKF LGYIIYRGAN NQKCAFRQNP DDPRLSHLKT IPTSAGSKLL 540
  541 ISGWWGFVRH PNYLGDIIMA LAWCLACGFN HILPYFYVIF LTLLLIDRAA RDEQRCREKY 600
  601 GLDWDKYCQH VRYRLLPYVY