YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6273404
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.94
Transmembrane Helix	58	73	0.87
Non-Cytoplasmic	74	89	0.74
Transmembrane Helix	90	111	0.89
Cytoplasmic	112	130	0.83
Transmembrane Helix	131	150	0.75
Non-Cytoplasmic	151	167	0.69
Transmembrane Helix	168	187	0.94
Cytoplasmic	188	196	0.81
Transmembrane Helix	197	215	0.92
Non-Cytoplasmic	216	243	0.83
Transmembrane Helix	244	264	0.83
Cytoplasmic	265	282	0.96
Transmembrane Helix	283	307	0.87
Non-Cytoplasmic	308	358	0.87
Transmembrane Helix	359	380	0.77
Cytoplasmic	381	399	0.90
Transmembrane Helix	400	418	0.95
Non-Cytoplasmic	419	435	0.81
Transmembrane Helix	436	455	0.90
Cytoplasmic	456	462	0.76
Transmembrane Helix	463	485	0.89
Non-Cytoplasmic	486	492	0.74
Transmembrane Helix	493	515	0.90
Cytoplasmic	516	548	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTERDGNAA LEESSSQEPE LYSPASPGPQ REPISTYFEE KVPIPEDDLT KLFSFRKLWA  60
   61 FTGPGFLMSI AYLDPGNIES DLQSGARAGF KLLWVLLGAT IIGLLLQRLA ARLGVVTGMH 120
  121 LAEVCNRHYP TVPRIILWLM VELAIIGSDM QEVIGSAIAL NLLSVGRIPL WAGVLITIID 180
  181 TFVFLFLDKY GLRKLEAFFG FLITIMALSF GYEYVRVAPN QGEVLKGMFV PYCSGCGPTQ 240
  241 LEQAVGVVGA VIMPHNIYLH SALVKSRDIN RENKKEVKEA NKYYFIESSI ALFVSFLINV 300
  301 FVVAVFAEAF YGRTNMEVSL QCNETGSAHS ELFPANNETL EVDIYKGGVV LGCFFGPAAL 360
  361 YIWAIGILAA GQSSTMTGTY SGQFVMEGFL NLRWSRFARV LLTRSIAIFP TLLVAVFQDV 420
  421 QHLTGMNDFL NVLQSMQLPF ALIPILTFTS LTSLMNDFAN GLVWKIGGGL VILVVCAINM 480
  481 YFVVVYVTAL NSILLYVFSA LLSIAYLSFV SYLVWRCLIA LGVSRLDFRG SVQYPPAVLM 540
  541 DEQPEFDS