YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18495785
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEFLEDPSV LTKDKLKSAL LANNVALPNG DQRKDVYVQL YLKNLTVQNK KSSGSPDVFS  60
   61 SDEELPPAPV VSNRSRSGRK ATRKTDKVRP DDVDVTELSN EGLKDLLLKY GLNAGPIVAS 120
  121 TRKVYEKRLQ KLLDQGPPVA VALPSETSQT DGNQNGNNDS DQYSDREEEP VAPAPVTVPE 180
  181 PEVEAELIPV VERPVRSRGK TPVTSRTRSG QHTRDFSEPS IVKEVSVSLM RMKVQPLTVP 240
  241 KDPKPSKRYS MSATESTKRP VSSLNNKHDE NTADIPSPPH RQSSREPLVS LINTACVEVD 300
  301 DQGMQDVLSC RSANGGLLAQ GVRSAAVSKL SKPVLSQSKP SKPLVDMMCC LSPSSDRQKE 360
  361 VEKVSAIDQT PRAVERDVLK EIFPTENLNT PTGISATCRR PIRGAAGRPL IDTWLNESRQ 420
  421 RLSDLKQTTS SSSFSSTSSY TESRSVPRVS SIPLSASKST APPTVKSRSR RSLPVWVQLV 480
  481 LLSAVAGFLF FIYQAMETND VGLFKQSGTD DSTSK

Type	Start	End	Confidence
Non-Cytoplasmic	1	473	0.55
Transmembrane Helix	474	495	0.90
Cytoplasmic	496	515	0.50