YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6006630
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRQSSLISL WLQLELCAMA VLLTKGEIRC YCDAPQCVAT GYMCKSELNA CFTKLLYPQN  60
   61 TNSPLTHGCL DSLGSTTEPC KGSAVQNPTA APTLRLECCH EDMCNYRGLH DVLSHPRSDA 120
  121 SGPGGRHQHD NTRNLITKVH ELTSSKELWF RAAVIAVPIA GGLILVLLIM LALRMLRSEN 180
  181 KRLKDQRQQM LSRLHYSFHG HHSKKGQMAK LDLECMVPVT GHENCCLTCD KLRHTDLSND 240
  241 KIISLVHWGM YSGHGKLEFV

Type	Start	End	Confidence
Signal Peptide	1	20	0.81
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	151	0.93
Transmembrane Helix	152	173	0.95
Cytoplasmic	174	260	0.93