YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21745398
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKERPRPE KLSVYLYIPN IVGYMRVLLN CVAFAVCFSN KTLFSLLYFF SFCCDAVDGW  60
   61 CARRFNQVST FGAVLDMVTD RVSTACLLVV LSQVYRPSLV FLSLLALDIA SHWLQMYSTF 120
  121 LAGKSSHKDV KDSTSWLFRL YYGNRIFMCY CCVSCEVLYI ILLLIAKNQT ENLLNVVVST 180
  181 LTQISPLSLL LALTIFGWSM KQTVNIIQMK TAADVCVLYD IEKQQKP

Type	Start	End	Confidence
Cytoplasmic	1	15	0.89
Transmembrane Helix	16	38	0.83
Non-Cytoplasmic	39	97	0.47
Transmembrane Helix	98	117	0.66
Cytoplasmic	118	145	0.60
Transmembrane Helix	146	166	0.93
Non-Cytoplasmic	167	175	0.64
Transmembrane Helix	176	200	0.82
Cytoplasmic	201	227	0.69