YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MPV17_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLWRSYQA LMAKHPWKVQ IITAGSLVGV GDVISQQLIE RRGLANHNAR RTAKMMSIGF  60
   61 FFVGPVVGGW YKVLDKLVTG GTKSAALKKM LVDQVGFAPC FLGAFLGITG TLNGLTVEEN 120
  121 VAKLQRDYTD ALISNYYLWP PVQIANFYFI PLHHRLAVVQ IVAVVWNSYL SWKANKM

Type	Start	End	Confidence
Cytoplasmic	1	16	0.82
Transmembrane Helix	17	39	0.77
Non-Cytoplasmic	40	52	0.76
Transmembrane Helix	53	74	0.88
Cytoplasmic	75	90	0.79
Transmembrane Helix	91	112	0.83
Non-Cytoplasmic	113	150	0.80
Transmembrane Helix	151	170	0.82
Cytoplasmic	171	177	0.83