YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CX32_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWGFLSAL LDKVQSHSTV IGKIWMSVLF IFRILVLGAG AENVWGDERS NLVCNTNTPG  60
   61 CDNLCYDWQF PISHIRFWVM QIIFISTPTL VYLGHVVHII HQENKQRELL KSNPMAKSPK 120
  121 YTDENGKVEI KGSMLGSYLT QLFIKIILEV AFIVGQYYLF GFIIDHKFIC ERSPCMRAEC 180
  181 FVSRPTEKSI FIIFMLVVAC VSLALNVLEI FYLLCRRISR RSKKCRQAMY NGESRYPGHF 240
  241 TTELESMNGM RHNEFNVAFQ NKWSQRKGSL DAAKPEA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	41	0.90
Non-Cytoplasmic	42	76	0.95
Transmembrane Helix	77	99	0.91
Cytoplasmic	100	140	0.92
Transmembrane Helix	141	160	0.88
Non-Cytoplasmic	161	190	0.93
Transmembrane Helix	191	214	0.95
Cytoplasmic	215	277	0.97