YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125846801, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWGFLSKL LDKVQSHSTS IGKVWLTVLL IFRIMVLGAG LDKVWGDEQS RMVCNINTPG  60
   61 CLNACYDHIF PISHMRFWVL QIIFVATPNL VYLFYVLHVI HRENKLRQRL ENQAEKHGVK 120
  121 LPKYTDGNGK VYYKGNLLGC YMFSLIVTIL LEAGFLVGQY FLIGLLMPMQ LDCNVEPCPS 180
  181 VGLHCFTSRP TEKSIFIVFM LIVACVSLAL NIGEIFYLIG RRNVYKARTR SNAVDEMHKL 240
  241 SPTETFC

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.92
Non-Cytoplasmic	42	76	0.96
Transmembrane Helix	77	99	0.93
Cytoplasmic	100	137	0.97
Transmembrane Helix	138	162	0.87
Non-Cytoplasmic	163	195	0.96
Transmembrane Helix	196	220	0.91
Cytoplasmic	221	247	0.99