YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125846791, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEWDFLGRL LDRVQTHSTV VGKIWLTVLF VFRILVLGAG AERVWGDEQS DFICNTEQPG  60
   61 CENVCYDRAF PISHVRYWVL QIISVSTPTL AYLGHVVHVI HAEKKVREMM KKELQNEQIN 120
  121 LFLKKGYKVP KYSRENGKVN IRGRLLRSYI LSLLCKILLE VGFILGQYYL YGFTLRAQYV 180
  181 CSYFPCPHKV DCFLSRPTEK TIFIWFMLVV ACISLLLNVI EILYLCAKKI SECLSRKKDY 240
  241 TITPVTPVVS KKNFKNTDQV IQNWMNRELE LQRREPGNEA TKSLASEGRS ADMQEVHI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	41	0.90
Non-Cytoplasmic	42	78	0.94
Transmembrane Helix	79	102	0.88
Cytoplasmic	103	147	0.98
Transmembrane Helix	148	170	0.86
Non-Cytoplasmic	171	202	0.95
Transmembrane Helix	203	226	0.92
Cytoplasmic	227	298	0.98