YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1655702, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.75
Transmembrane Helix	5	29	0.71
Non-Cytoplasmic	30	81	0.55
Transmembrane Helix	82	96	0.71
Cytoplasmic	97	97	0.02
Transmembrane Helix	98	112	0.52
Non-Cytoplasmic	113	113	0.07
Transmembrane Helix	114	131	0.90
Cytoplasmic	132	140	0.45
Transmembrane Helix	141	160	0.88
Non-Cytoplasmic	161	168	0.56
Transmembrane Helix	169	193	0.88
Cytoplasmic	194	203	0.53
Transmembrane Helix	204	227	0.87
Non-Cytoplasmic	228	234	0.59
Transmembrane Helix	235	258	0.72
Cytoplasmic	259	273	0.67
Transmembrane Helix	274	297	0.91
Non-Cytoplasmic	298	325	0.63
Transmembrane Helix	326	348	0.84
Cytoplasmic	349	362	0.95
Transmembrane Helix	363	386	0.87
Non-Cytoplasmic	387	393	0.82
Transmembrane Helix	394	417	0.90
Cytoplasmic	418	430	0.94
Transmembrane Helix	431	450	0.93
Non-Cytoplasmic	451	458	0.83
Transmembrane Helix	459	479	0.93
Cytoplasmic	480	781	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKVFLNYC GYIFILALIP IVFSESSYLL NPVTLASRTS TIPLMISNMN RHDSTNHSQG  60
   61 GGHHGKKKAF PVLDLDYTRI RMPFEIALWI LLASLMKLGF HVIPTLSNVV PESCLLIVVG 120
  121 LLVGGLIKAV GETPPVLNSD VFFLFLLPPI ILDAGYFLPL RPFSENLGTI LMFAVVGTLW 180
  181 NAFFLGSLLF AVCQIGGEDL RNVGLLANLL FGSIISAVDP VAVLAVFEEI HINELLHILV 240
  241 FGESLLNDAV TVVLYHLFEE YASLEQITFR DISLGFLSFL VVALGGVFVG LVYGIIAAFT 300
  301 SRFTSHIRVI EPLFVFLYSY MAYLSAELFH LSGIMALIAT GVVMRPYVEA NISHKSHTTI 360
  361 KYFLKMWSSV SETLIFIFLG VSTVAGPHKW NWPYVISTLI FCFVSRVLGV LGLQWFLNKF 420
  421 RIVKLTPKDQ FIIAYGGLRG AIAFSLGYLL DSNHFPREMF LIAIITVIFF TVFVQGMTIR 480
  481 PLVELLAVKK KQESKRSINE EIHSEFLDHL LTGIEDICGH YGHHHWKDKL NRFNKTYVKK 540
  541 CLIAGERSTE PQLIAFYHKM EMKQAIELVE GGGIGKIPST VSTVSMQNIQ PKPKLAERFI 600
  601 PTLSKGKEEE IRKILRTNLQ KTRQRLRSYN RHTLVADPYE DAWNQMLLRR QKVHQMEQRV 660
  661 TNYLTVPAHK LDSPTMSRAR VGSDPLAYEP KPDSENIPTI TIDPASPESV DTVNETQEEE 720
  721 EGITMTVREP PSPGADDVFI PQESPNSQRL QRCLSDPGPH PEEIQPFIPQ KKKLIDFVKG 780
  781 L