YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148231963, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSQKDFVNK CNQMLRLRNK LLRQALSECL GTLILVMFGC GSVAQVVLSK GSHGQFLTVN  60
   61 LAFGFAVMLG ILISGQVSGG HLNPAVTFAL CILAREPWIK FPVYSIAQTL GAFLGAGIVY 120
  121 GLYYDAIWFF ANDQLYVTGE NGTAGIFTTF PSDHLTLMNG FFDQFIGTAA LIVCVLAIVD 180
  181 PNNNPIPRGL EAFTVGFVVL VIGTSMGFNS GYAVNPARDF GPRLFTSLAG WGTEVFWAGN 240
  241 QWWWVPIVSP LLGSFAGVLV YQLMIGCHIE PAPQSTQQEN IKLADVKNKD RL

Type	Start	End	Confidence
Cytoplasmic	1	24	0.94
Transmembrane Helix	25	48	0.88
Non-Cytoplasmic	49	60	0.77
Transmembrane Helix	61	82	0.84
Cytoplasmic	83	100	0.80
Transmembrane Helix	101	124	0.87
Non-Cytoplasmic	125	159	0.94
Transmembrane Helix	160	179	0.92
Cytoplasmic	180	191	0.75
Transmembrane Helix	192	212	0.91
Non-Cytoplasmic	213	241	0.90
Transmembrane Helix	242	265	0.87
Cytoplasmic	266	292	0.94