YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55251127, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLWYLYEWI DIKSILIFLC VFLLLGDYIK NKAPKNFPPG PWSLPIIGDL HHIDNSKIHL  60
   61 QFTKFAERYG NIFSFRLFGP RIVVLNGYNL VKEVYIKQGD NLADRPVLPL FYEIVGDKGL 120
  121 ILSSGYKWKH QRRFALSTLR NFGLGKKSLE PSINVECGFL NEAISNEQGR PFDPRLLLNN 180
  181 AVSNVICVLV FGNRFDYSDH HFQTLLKNIS EAVYLEGSIC NQLYNMFPWL MERLPGPHKT 240
  241 IITLWRKVTD FVREKVNEHR VDYDPSNPRD YIDCFLTEME KLKDDTAAGF DVENLCICSL 300
  301 DLFVAGTETT STTLYWGLLY MIKYPEIQAK VQEEIDAVVG GSRQPSVSDR DNMPYTNAVI 360
  361 HEIQRMGNIA PINLARSTSE DTQIGNYSIP KGTMVTSNLT SVLFDESEWE TPHSFNPGHF 420
  421 LDAEGKFRRR DAFLPFSLGK RVCLGEQLAR MELFLFFSSL LQRFTFSPPA GVEPSLDYKM 480
  481 GGTHCPKPFK LCAVPR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.45
Transmembrane Helix	9	29	0.57
Non-Cytoplasmic	30	496	0.87