YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13785152
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.97
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	240	0.99
Transmembrane Helix	241	262	0.96
Cytoplasmic	263	273	0.89
Transmembrane Helix	274	294	0.91
Non-Cytoplasmic	295	326	0.93
Transmembrane Helix	327	348	0.86
Cytoplasmic	349	364	0.82
Transmembrane Helix	365	385	0.89
Non-Cytoplasmic	386	410	0.91
Transmembrane Helix	411	433	0.91
Cytoplasmic	434	452	0.92
Transmembrane Helix	453	475	0.92
Non-Cytoplasmic	476	514	0.96
Transmembrane Helix	515	535	0.95
Cytoplasmic	536	559	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLKMQHCC GITRYFLLLF TVALQTTSGQ YHGEKGISIP EHGFCQPISI PLCTDIRYNQ  60
   61 TIMPNLLGHT NQEDAGLEVH QFYPLVKVQC SMDLKFFLCS MYAPVCTVLE QAIPPCRSLC 120
  121 ERARQGCEAL MNKFGFQWPE RLRCENFPVH GAGEICVGQN TSDAGSPTSN PTPYVPELIT 180
  181 LQPNLVVRPN QQFTCPLQLK VPTYLKYHFM GEKDCGAPCE PTRPNGLMYF REEEVKFGRL 240
  241 WVGIWSILCC VSTLFTVLTY LVDMRRFRYP ERPIIFLSGC YFMVAVAYAA GFFLEDKVVC 300
  301 IDKFSDDGYK TVAQGTKKEG CTILFMILYF FGMASSIWWV ILSLTWFLSA GMKWGHEAIE 360
  361 ANSQYFHLAA WAVPAVKTIT ILAMGQVDGD TLTGVCYVGI YNVDSLRGFV LAPLFVYLFI 420
  421 GTSFLLAGFV SLFRIRTIMK HDGTKTEKLE KLMVRIGVFS VLYTVPVTIV IACYFYEQAF 480
  481 QKQWEKTWRM QTCKRFAVPC PINNFAPMSP DFTVFMIKYL MTMIVGITSG FWIWSGKTLQ 540
  541 SWRRFYKRLS NSNQGETTV