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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1212912, gi|4...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGGEGGED EIQFLRTDDE VVLQCVSSIH KEQRKFCLAA EGLGNRLCFL EPTSEAKYVP  60
   61 PDLCICNFVL EQSLSVRALQ EMLTNTGDNA SEGAAQGGHR TLLYGHAILL RHSFSEMYLT 120
  121 CLTSSRSQTD KLAFDVGLRE NAAGEACWWT IHPASKQRSE GEKVRIGDDL ILVSVSSERY 180
  181 LHLSMSNGSI QVDASFMQTL WNVHPTCSGS NITEGYLLGG HVVRLFHGHD EYLTIPSTDQ 240
  241 NDSQQKKVLY ETGGAGVRAR SLWRVEPLRI SWSGSNIRWG QPFRLRHITT GMYLALNDDE 300
  301 GLVMLDREKS DTTSSAFCFR ASKELKEKQD STLKRDIDGM GVPEIKYGDS VCFIQHVASA 360
  361 LWLTYKAPDA KSARLGLLKR KVILHQEGHM DDGLTLQRCQ HEESQAARII RNTTSLFSQF 420
  421 ISGNNRTLSP IALPVEEMAQ TLQDLIKYFQ PPGEDLEHED KQNKLRSLKN RQNLFKDEGM 480
  481 LALVLNCIDR LNDYNSAAHF AEISRVENGT AWKEILNLLY ELLAALIRGN RNNCTQFSSN 540
  541 LDWLISKLDR LESSSGILEV LHCILIESPE ALNIIAEEHI KSIISLLDKH GRNYKVLDVL 600
  601 CSLCVCNGVA VRANQNLICD NLLPRRDLLL QTRLINDVTS IRPNIFLGVA EGSAQYKKWY 660
  661 FELIIDQVDP FLTAEPTHLR VGWASTSGYA PYPGGGEGWG GNGVGDDLYS FGFDGLHLWS 720
  721 GRVPRAVASV NQHLLSSDDV VSCCLDLGVP SISFRINGQP VQGMFENFCT EGFFFPVVSL 780
  781 SAGVKARFLL GGRHGEFKFL PPTGYAPCYE ALLPKEKMKL EPVKEYKRDS DGVRDLLGTT 840
  841 QFLSQASFIP CPIDTSQIAL PFHLEKIRDK LAENIHELWG MNKIELGWTY GKIRDDNKRH 900
  901 HPCLVEFSKL PETEKNYNLQ MSTETLKTLL ALGCHIVHAN PAAEEDLKXV KLPKNYIMSN 960
  961 GYKPAPLDLS EVKLLPSQEF LVNKLAENAH NVWAKDRIKQ GWTYGIQQDL KNKRNPRLVP1020
 1021 YDLLDERTKK SNRDSLREAV RTFAGYGYNV EPPDQEIADQ TVEKVSIDKI RFYRVEQSYA1080
 1081 VKSGKWYFEF EAVTGGDMRV GWARPGCRPD IELGADDQAF VFEGSKGQRW HQGSGFFGRS1140
 1141 WQPGDVVGCM INLDDKSIIF TLNGELLITS KGSELAFADF GIESGFVPIC SLGLSQIGRM1200
 1201 NLGMDASTFK YYTMCGLQEG FEPFAVNMNR DVAMWFSKRL PTFVNVPKNH PHIEIWRIDG1260
 1261 TIESPPRLKV THKTLGTQNS NSDMIYCRLS MPIEFRSSFN FGVGVENASS DALQKRKHSQ1320
 1321 EFPASSTTCF YSLRIFAGQD PSSVWVGWVT PDYHFYSENF DINKNCTVTV TLGDERGRVH1380
 1381 ESVKRSNCYM VWGGDIAANS QRSGRSNVDL EIGCFVDLAT GMLSFTANGK ELGTCYQVEP1440
 1441 NTKLFPAAFV QPTSTNLIQF ELGKLKNTMP LSAAIFKSEE RNPVPQCPPR LDVQTITPVL1500
 1501 WSRMPNSFLK VETERVSERH GWVVQCLEPL QMMALHIPEE NRCVDILELC EQEDLMKFHY1560
 1561 HTLKLYSSVC ALGNTRVAYA LCSHVDISQL FYTIDNQYLP GLLRSGFYDL LISIHLDHAK1620
 1621 QAKLMMNNEF IIPVTEETRT IKLYPDETKK HGLPGVGLST CLKPSFNFST PCFIVTSEEH1680
 1681 QTSSPDIPLD TLKSKAISML TEAVQCSGSH IRDPVGGHIA FQFVPVLKLI ATLLVMGVFD1740
 1741 DDDVKQVLIL IDPNVFGDHK EEAEEKTEKE EVTQVEEKAV EAGEKAVKET KAPTKGLLQT1800
 1801 RLPESVKLQM CHLLNYFCDC ELQHRVEAIV SFADHYVSKL QYNQKYRYNE LMQALNMSAA1860
 1861 LTAKKTKEFR SPPQEQINML LNFQLGEDCP CPEEIRDELY DFHDDLLIHC GIPLEEEEEE1920
 1921 EEDSSLTGKL RSLIYKIKGP PKPEKIEPRE EEDKSPTTLK ELISQTMVRW SQEDQIQDPE1980
 1981 LVRIMYTLLR RQYDSIGELL QALRKAYTIS AASVKDTINL LAALGQIRSL LSVRMGKEEE2040
 2041 LLMINGLGDI MNNKVFYQHP NLMRVLGMHE TVMDVMVNVL GGDKSQIAFP KMVASCCRFL2100
 2101 CYFCRISRQN QKAMFEHLSY LLENSSVGLA FPSMRGSTPL DVAAASVMDN NELALALEEP2160
 2161 DLDKVVTYLA GCGLQSCPVL LAKGYPDIGW NPIEGERYLS FLRFAVFVNS ESVEENASVV2220
 2221 VKLLIRRPEC FGPELRGEGG NGLLAAMQEA IRISENPTRD LPSQGYKREG DEEEEEEEEI2280
 2281 VHMGNAIMSF YSALIDLLGR CAPEMHLIQS GKGEAIRIRS ILRSLVPTED LVGIISIPLK2340
 2341 LSTVNKDGTV NEPDMSANFC PDHKAPMVLF LDRVYGIKDQ SFLLHLLEVG FLPDLRASAS2400
 2401 LDTVSLSTTE AALALNRYIC SAVFPLLKRC APLFSGTEHH ASLVDSMLHT IYRLSKGRSL2460
 2461 TKAQRDTIEE CLLAICHHLR PSMLQQLLRR LVFDVPLLNE YCKMPLKLLT NHYEQCWKYY2520
 2521 CLPSGMGSYG IAAEDELHLT EKLFWGIFDS LSHKKYDPEL FRMALPCLSA IAGALPPDYL2580
 2581 DTRIRSTLEK QTSVDPEGNF DPKPVNTANL VLPEKLEYIV SKYAEHSHDK WAFDKTNNGW2640
 2641 KYGVSLDENT KTHPLIRPFK TLTEKEKEIY RWPVRESLKT MLAMGWSLER TKEGGEGMLH2700
 2701 QRENEKLRSI SQSSQGNGYS PAPLDLTNVV LSRELQGMVE VMAENYHNIW AKKKKMELES2760
 2761 KGGGSHPLLV PYDTLTAKEK SRDREKAQEL FKFLQVNGII ISRGLNDMDL DASSMEKRFA2820
 2821 FKFLKKILKY VDSAQEFIAH LEAIVTSGKT EKSPHDQEIK FFAKVLLPLV DQYFTNHCLY2880
 2881 FLSSPTKTLS SSGYASNKEK EMVASLFCKL AALVRHRISI FGSDSTTMVS CLHILAQSLD2940
 2941 TRTVMKSGSE LVKAGLRAFF ENAAEDLEKT SENLKLGKFT HSRTQIKGVS QNINYTTVAL3000
 3001 LPVLTSIFEH ISQYHFGVDL LLGDVQVSCY RILCSLYSLG TGKNIYVERQ RPALGECLAS3060
 3061 LAAAIPVAFL EPSLNHYNPL SVFNTKSARE RAILGMPDTV EEMCPEIPQL DGLIKEINNL3120
 3121 AESGARYTEM PHVIEVILPM LCNYLSYWWE RGSESVPESA GPCCTMITSE HLSIILGNIL3180
 3181 KIINNNLGID EASWMKRIAV YAQPIISKAR PDLLKTHFIP TLEKLKKKAI KIVMEEEQLR3240
 3241 ADSKSDTQEA ELLILDEFAV LCRDLYAFYP MLIRYVDNNR ANWLKKPDAD SDELFRMVAE3300
 3301 VFILWCKSHN FKREEQNFVI QNEINNLAFL TGDTKSKMSK AMQVKSGGQD QERKKSKRRG3360
 3361 DLYSIQTSLI VAALKKMLPI GLNMCTPGDQ ELISLAKTRY SHRDTDEEVK EHIRNNLHLQ3420
 3421 EKSDDPAVKW QLNLYKDILK SDEPPDPEKN VERVQRISAA LYHLDQVEQP LRSKKAVWHK3480
 3481 LLSKQRKRAV VACFRMAPLY NLPRHRSINL FLHGYQNYWI ETEEYSFEEK LVQDLATSPK3540
 3541 KEEEEEEDTE KEQPDPLHQI ILYFSRNALT ERSKLEDDPL YIAYAAMMAK SCQEEEEEEE3600
 3601 EDKEKTFEEK EMEKQRTLYQ QARLHDRGAA EMVLQMISAS KGHTGPMVVE TLKLGIAILN3660
 3661 GGNTIVQQKM LDYLKEKKDA GFFQSLSGLM QSCSVLDLNA FERQSKAEGL GMVTEEETLI3720
 3721 VRERGEKVLQ HDEFTRDLFR FLQLLCEGHN NDFQNYLRTQ MGNTTTVNII ISTVDYLLRL3780
 3781 QESISDFYWY YSGKDVIDES GQRNFSKALA VTKQIFNSLT EYIQGPCIGN QQSLAHSRLW3840
 3841 DAVVGFLHVF ANMQMKLSQD SAQIELLKEL LDLLKDMVVM LLSLLEGNVV NGTIGKQMVD3900
 3901 TLVESPSNVE LILKFFDMFL KLKDLTNSDA FKEHDPDGKG IISKKDFQKS MEAQKQYIQS3960
 3961 EIEFLLSCAE ADENDMFNYI DFVERFHEPA KDIGFNVAVL LTNLSEHMPN DSRLQSLLEP4020
 4021 AEESVLNYFE PYLGRIEIMG GAKKIERVYF EISESSRMQW EKPQVKESKR QFIFGIVNEG4080
 4081 GEEEKMELFV NFCEDTIFET QLASQISESD SRERLRKIEE PCYVVDIGDD EEEKKSLESP4140
 4141 SAFALACAAV KKNVANFFKM VTVKNLRKQY RKVRKMTVKE MVKCFSLFFW ILFVGVFQLF4200
 4201 FTIVWGIFQI LWSTVFGGGL VEGAKNIKVT KILGDMPDPT QFGIHDDVTE AEKTEGAEHG4260
 4261 IRDELVQFVK GEKGETDIIS DIFGIPSKKE GGSKHGHDAG LGDIAEILGS DIQSSLENNA4320
 4321 RKKKGLQIPE TAKEAEAERK VEAEKADMED GEKQDKAKEE QSEQPEEGKM KKKKRRHGQK4380
 4381 IEKPEAVMAN FFKALEIYQT KILHYLARNF YNLRFLALFV AFAINFILLF YKVTEEPLDE4440
 4441 VEEDSNLWNS FEEEEEEEGM VFFVLEESTG YMAPALRALA LFIPIISFVC VIGYYCLKVP4500
 4501 LVVFKREKEV ARKLEFDGLY ITEQPSEDDI KGQWDRLVIN TPSFPNNYWD KFVKRKVINK4560
 4561 YGDLYGAERI AELLGLDKNA RHFCPVEESE PEAASLVSWL SSIDTKYHIW KLGVVFTDNS4620
 4621 FLYLAWYTTM SILGHYNNFF FAAHLLDIAM GFKTLRTILS SVTHNGKQLV LTVGLLAVVV4680
 4681 YLYTVVAFNF FRKFYNKSED EDEPDMKCDD MMMCYLFHMY VGVRAGGGIG DEIEDPAGDP4740
 4741 YEMYRIVFDI TFFFFVIVIL LAIIQGLIID AFGELRDQQE QVREDMETKC FICGIGNDYF4800
 4801 DTIPHGFETH TLQEHNLANY LFFLMYLINK DETEHTGQES FVWKMYQERC WDFFPAGDCF4860
 4861 RKQYEDQLG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle