YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55251028, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	134	0.98
Transmembrane Helix	135	157	0.88
Non-Cytoplasmic	158	173	0.94
Transmembrane Helix	174	195	0.92
Cytoplasmic	196	204	0.84
Transmembrane Helix	205	225	0.89
Non-Cytoplasmic	226	277	0.90
Transmembrane Helix	278	297	0.94
Cytoplasmic	298	355	0.95
Transmembrane Helix	356	378	0.83
Non-Cytoplasmic	379	394	0.88
Transmembrane Helix	395	417	0.92
Cytoplasmic	418	536	0.98
Transmembrane Helix	537	556	0.94
Non-Cytoplasmic	557	599	0.70
Transmembrane Helix	600	619	0.40
Cytoplasmic	620	663	0.72
Transmembrane Helix	664	683	0.91
Non-Cytoplasmic	684	734	0.83
Transmembrane Helix	735	756	0.86
Cytoplasmic	757	907	0.97
Transmembrane Helix	908	931	0.76
Non-Cytoplasmic	932	949	0.76
Transmembrane Helix	950	971	0.60
Cytoplasmic	972	1029	0.50
Transmembrane Helix	1030	1058	0.69
Non-Cytoplasmic	1059	1112	0.75
Transmembrane Helix	1113	1133	0.73
Cytoplasmic	1134	1151	0.73
Transmembrane Helix	1152	1175	0.84
Non-Cytoplasmic	1176	1231	0.85
Transmembrane Helix	1232	1253	0.85
Cytoplasmic	1254	1263	0.76
Transmembrane Helix	1264	1285	0.90
Non-Cytoplasmic	1286	1294	0.77
Transmembrane Helix	1295	1313	0.81
Cytoplasmic	1314	1322	0.52
Transmembrane Helix	1323	1341	0.56
Non-Cytoplasmic	1342	1406	0.78
Transmembrane Helix	1407	1426	0.94
Cytoplasmic	1427	1496	0.83
Transmembrane Helix	1497	1520	0.89
Non-Cytoplasmic	1521	2196	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNESKNMYI PEDTLENHQG SNYSSPSLAP VPSLNEDEHV GGGGGVLGLA PEHIPTPGAP  60
   61 LSWQAAIDAA RQAKLMGTTG APISTASSTQ RKRQHYTKPK KQASTASTRP PRALLCLTLK 120
  121 NPIRRACINI VEWKPFEIII LMTIFANCVA LAVYIPFPED DSNATNSNLE RVEYLFLIIF 180
  181 TVEAFLKVIA YGLLCHPNAY LRNGWNLLDF IIVVVGLFSA ILEQATKGDG GTSMGGKAAG 240
  241 FDVKALRAFR VLRPLRLVSG VPSLQVVLNS IIKAMVPLLH IALLVLFVII IYAIIGLELF 300
  301 MGKMHRTCFF YKDGHKGHIA EEKPAPCAPS SAHGRHCSPP NITQCMMGWE GPNDGITNFD 360
  361 NFAFAMLTVF QCITMEGWTD VLYWMQDAMG YELPWVYFVS LVIFGSFFVL NLVLGVLSGE 420
  421 FSKEREKAKA RGDFQKLREK QQLEEDLKGY LDWITQAEDI DPENDDEGLD DDKPRNLSMP 480
  481 ASENESVNTD NAPAGDMEGE TCCTRMANRI SKSKFSRYSR RWNRLCRRKC RAAVKSNVFY 540
  541 WLVIFLVFLN TLTIASEHHQ QPEWLTNVQD IANKVLLALF TGEMLLKMYS LGLQAYFVSL 600
  601 FNRFDSFVVC GGILETILVE TKIMSPLGIS VLRCVRLLRI FKITRYWNSL SNLVASLLNS 660
  661 VRSIASLLLL LFLFIIIFSL LGMQLFGGKF NFDETRRSTF DNFPQSLLTV FQILTGEDWN 720
  721 SVMYDGIMAY GGPSFPGMLV CIYFIILFIC GNYILLNVFL AIAVDNLADA ESLTSAQKEE 780
  781 EEEKERKKLA RTASPEKRQN SEKPPLEDEK KEEKIELKSI TSDGETPTAT KINIDEYTGE 840
  841 DNEEKNPYPV NDFPAGEDDE EEPEMPVGPR PRPLSDIQLK EKAVPMPQAK AFFIFSPSNK 900
  901 FRVLCHKIVN HNIFTNLILF FILLSSISLA AEDPVKNDSF RNQILGYADY VFTGIFTIEI 960
  961 ILKMTAYGAF LHKGSFCRNY FNILDLVVVS VSLISSGIQS SAINVVKILR VLRVLRPLRA1020
 1021 INRAKGLKHV VQCVFVAIRT IGNIVIVTSL LQFMFACIGV QLFKGKFFYC TDTSKQTQAE1080
 1081 CRGAYILYKD GNVGKPEKAQ RSWENSDFNF DDVLQGMMAL FAVSTFEGWP GLLYRAIDSH1140
 1141 AEDVGPIYNY RVVISIFFII YIIIIAFFMM NIFVGFVIVT FQEQGEQEYK NCELDKNQRQ1200
 1201 CVEYALKARP LRRYIPKNPY QYKVWYVVNS TYFEYLMFTL ILLNTICLAM QHHGQSQSFN1260
 1261 KAMNILNMLF TGLFTVEMIL KLIAFKPRGY FSDPWNVFDF LIVIGSIIDV ILSEINHYFV1320
 1321 DAWNTFDALI VVGSVVDIAI TEVNPADPSS SPPSSVVRPM GLQNTEDNAR ISITFFRLFR1380
 1381 VMRLVKLLSR GEGIRTLLWT FIKSFQALPY VALLIVMLFF IYAVIGMQMF GKIALRDNSQ1440
 1441 INRNNNFQTF PQAVLLLFRC ATGEAWQEIM LACSPNRPCE KGSEINHSSE DCGSHFAIFY1500
 1501 FVSFYMLCAF LIINLFVAVI MDNFDYLTRD WSILGPHHLD EFKRIWAEYD PEAKGRIKHL1560
 1561 DVVTLLRRIQ PPLGFGKLCP HRVACKRLVS MNMPLNSDGT VMFNATLFAL VRTALRIKTE1620
 1621 GNLEQANEEL RAIVKKIWKR TSMKLLDQVV PPAGDDEVTV GKFYATFLIQ EYFRKFKKRK1680
 1681 EQGLVAKIPP KTALSLQAGL RTLHDMGPEI RRAISGDLTV EEELERAMKE TVCAASEDDI1740
 1741 FRRSGGLFGN HVNYYHQSDG HVSFPQSFTT QRPLHISKSG SPGEAESPSH QKLVDSTFTP1800
 1801 SSYSSSGSNA NINNANNTAI GHRYPKPTVS TVDGQTGPPL TTIPLPRPTW CFPNKSSDSS1860
 1861 DSRLPIIRRE EASTDETYDE TFLDERDQAM LSMDMLEFQD EESKQLAPMV EAEVGEERRP1920
 1921 WQSPRRRAFL CPTALGRRSS FHLECLRKHN RPDVSQKTAL PLHLVHHQAL AVAGLSPLLR1980
 1981 RSHSPTLFTR LCSTPPASPS GRSGGGPCYQ PVPSLRLEGS GSYEKLNSSM PSVNCSSWYS2040
 2041 DSNGNHSGRA QRPVSLTVPP VTRRDSISLA HGSAGSLVEA VLISEGLGRY AHDPSFIQVA2100
 2101 KQEIAEACDM TMEEMENAAD NILNANAPPN ANGNLLPFIQ CRDTGSQESR CSLSLGLSPA2160
 2161 TGSDGALEAE LEESEGAGQR NSPLMEDEDM ECVTSL