YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70887667, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSLLSVAH SPGIPTAVSL MWKSGNHQSS NWSGMERENA TSLADLDTFE NRRAQYGQFS  60
   61 PSTSIFLTVL MTLLVFATVL GNALVILAFV VEKSLRTQGN FFFLNLAIAD FLVGGFCIPV 120
  121 YIPYVLTGEW RLGRGLCKLW LVVDYMLCTA SVFNIVLISF DRFQSVTKAV SYRCQKGITK 180
  181 DAVLKMLCVW LAAFLLYGPA IISWEHITGG SVVPDGECYA EFYFNWYFLM TASTVEFFTP 240
  241 FISVTYFNLS IYINIRNRCA MREEQPTYVR LRSFKMKPLG AGDVQRVFFV RPVEESRVAD 300
  301 LASRSRCCRL ASTAKVSAAE FGNGRQSKRR DSTLADLPPL QVEERILAAS EAQFHYVDHS 360
  361 AGPHRHRPDM VASLANRFRL SRDKKVAKSL AVIVCVFGLC WAPYTLLMII RAACHGQCVQ 420
  421 HYLYEISFWL LWINSSINPI LYPLCHSSFK RAFSKLLCPS KTKIQPQNID QKY

Type	Start	End	Confidence
Non-Cytoplasmic	1	65	0.77
Transmembrane Helix	66	91	0.89
Cytoplasmic	92	100	0.92
Transmembrane Helix	101	122	0.95
Non-Cytoplasmic	123	140	0.83
Transmembrane Helix	141	161	0.91
Cytoplasmic	162	181	0.93
Transmembrane Helix	182	203	0.91
Non-Cytoplasmic	204	228	0.91
Transmembrane Helix	229	252	0.86
Cytoplasmic	253	385	0.99
Transmembrane Helix	386	410	0.85
Non-Cytoplasmic	411	425	0.85
Transmembrane Helix	426	446	0.86
Cytoplasmic	447	473	0.93