YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19526448, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALSAWFWN ERFWLPQNVT WADLADTESG EQYPQAGHIL CALPVALGIF AVRLLFERFI  60
   61 AKPCAIRVGI QSSGPRRAQP NAILEKVFVS ITKCPDGKRL EGLSKQLDWD ARKIQRWFRH 120
  121 RRNQDKPSTL TKFCESMWRF TFYLYIFCYG IRFLWSTTWF WDTRQCWYNY PYQPLTSGLY 180
  181 YYYIKELAFY WSLMFSQFTD IKRKDFLIMF IHHLATVGLI SFSYVNNMVR VGTLVMCLHD 240
  241 ASDFLLEAAK LTNYAKFQRL CDSFFMFFAL VFVTTRLIIF PLWILNTTMF ESWDLIGPYP 300
  301 SWWLFNGLLL VLQILHIVWS YLILRIAYKA LVRGKVLKDD RSDVESSSEE EDTTLNGTKA 360
  361 IHNNGANRVN GHATSSSQWA EE

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.83
Transmembrane Helix	36	56	0.82
Cytoplasmic	57	139	0.97
Transmembrane Helix	140	161	0.85
Non-Cytoplasmic	162	205	0.65
Transmembrane Helix	206	226	0.64
Cytoplasmic	227	263	0.74
Transmembrane Helix	264	285	0.92
Non-Cytoplasmic	286	301	0.93
Transmembrane Helix	302	323	0.92
Cytoplasmic	324	382	0.96