YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21711799
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.94
Transmembrane Helix	36	55	0.82
Non-Cytoplasmic	56	94	0.87
Transmembrane Helix	95	128	0.71
Cytoplasmic	129	143	0.81
Transmembrane Helix	144	167	0.61
Non-Cytoplasmic	168	197	0.60
Transmembrane Helix	198	221	0.58
Cytoplasmic	222	263	0.85
Transmembrane Helix	264	285	0.79
Non-Cytoplasmic	286	298	0.82
Transmembrane Helix	299	317	0.92
Cytoplasmic	318	331	0.82
Transmembrane Helix	332	349	0.93
Non-Cytoplasmic	350	374	0.87
Transmembrane Helix	375	396	0.93
Cytoplasmic	397	404	0.83
Transmembrane Helix	405	423	0.84
Non-Cytoplasmic	424	449	0.76
Transmembrane Helix	450	466	0.84
Cytoplasmic	467	482	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SISTRCRLVE SKNKQIQLEH SRLEGVGSKG SPTMNGSWKL ILPVGFVLYS LPLFLRVNGT  60
   61 SDYVIDEEFH IPQGLAFCRK EFDVWDPKIT TFPGLYLIAL LLNPLSLCTV TGLRMLSLAG 120
  121 AGINILLLYK IRRRILAGSG GNSYAAHEAI TMSVLPPLYF FSHLYYTDTL SLTMVLLFYN 180
  181 YWQQEAHLPA AVFGAASVLM RQTNIVWVCM ATGMTVLDTL VNRCARTGRI PKENVRLMGK 240
  241 ELWLQLVSSP QLLCNCILSI LAKCCFYASI ILPFVGFLFI NGSIVVGDKS AHEASLHVPQ 300
  301 LFYFAIFAAG FGISNTIRQF RPAAELIRRN RVLSLLALLL ILVVVHLNTE VHPYLLADNR 360
  361 HYTFYIWSRL YGRFWWFRYA MAPAYLLSIC VLFCGLRHMP ESFKLMFPLS LFLVLCFQRL 420
  421 LELRYFLVPY ILFRLNTRHT RKGYAEWLEL GAHLLLNVAT FYVYFTKEFY WKNYRTPQRI 480
  481 IW