YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYN1L_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLSELQNP LLDKNSKHMV MADYGYGGDF HSNQYQENII NYFVTGGGGG GGGGGGGGGV  60
   61 AVTGGNGKAK SQLLDATSLH LAVEAFYKPN FILYKDDVSG KGKDYKNECC ETTFMEKKDK 120
  121 EVVVETPSTE DPQAKLLDEN DVKIQTVSYE VEEEEYVEYE TDCSSDSESE DNFIVIPPRD 180
  181 HLGLAIFSML CCFWPLGIAA FYFSQGTSKA VTKGDFPLAS IASRRALFLA ALSITIGTGV 240
  241 YVGVVVALIA YLSKPGHI

Type	Start	End	Confidence
Non-Cytoplasmic	1	181	0.50
Transmembrane Helix	182	204	0.91
Cytoplasmic	205	225	0.51
Transmembrane Helix	226	252	0.89
Non-Cytoplasmic	253	258	0.52