YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147906204, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.98
Transmembrane Helix	63	86	0.88
Non-Cytoplasmic	87	97	0.81
Transmembrane Helix	98	117	0.87
Cytoplasmic	118	130	0.82
Transmembrane Helix	131	150	0.89
Non-Cytoplasmic	151	162	0.75
Transmembrane Helix	163	183	0.77
Cytoplasmic	184	195	0.69
Transmembrane Helix	196	221	0.65
Non-Cytoplasmic	222	245	0.88
Transmembrane Helix	246	264	0.95
Cytoplasmic	265	295	0.87
Transmembrane Helix	296	314	0.76
Non-Cytoplasmic	315	331	0.72
Transmembrane Helix	332	351	0.90
Cytoplasmic	352	365	0.72
Transmembrane Helix	366	385	0.91
Non-Cytoplasmic	386	394	0.83
Transmembrane Helix	395	419	0.80
Cytoplasmic	420	430	0.66
Transmembrane Helix	431	451	0.80
Non-Cytoplasmic	452	495	0.93
Transmembrane Helix	496	515	0.94
Cytoplasmic	516	538	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSLTYKES RQRRQNNLYS DLNNVEYSGQ EDMDEDGREA LLQDCELSAP QKSANYKAEL  60
   61 GNILFLLFLY VLQGIPLGLA ASIPLILQSK NVSYTDQAIF SFVFWPFSLK LFWAPLVDSL 120
  121 YIKKFGRRKS WLVPTQYILG LFMMYLAATV DNLLGGEHGP DMFALTATFF LFEFLAATQD 180
  181 IAVDGWALTM LSKENVGYAS TCNSVGQTAG YFMGNVLFLA LESADFCNKY LRITPQPKGL 240
  241 VTLPDFLFFW GVIFLVTTTF VAVLKKENKN EKASKEETQS VKEAYGLLLN IVRMPAVLKF 300
  301 CVLLLTAKIG FSAADAVTGL KLIERGVPKE HLALLAVPMV PLQILLPLII SKYTAGPKPL 360
  361 DIFLKAIPFR LLMGLEFAFL VWWTPRVSHE TGFPLYYYLV ILLSYALHQI TLYSMFVAIM 420
  421 AFNAKVSDPL IGGTYMTLLN TVSNLGGNWP ATMALGMVDH LTSKECVGAE GHSCIGHDAA 480
  481 ELCVKSGGSC VTLVDGYYVE SIVCVVIGFC WWFFFGQRLK KLQDEGQSSW KCRRRNYF