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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NPC1_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRRVLTTV ILFCYLLISS QSIEFKNSQK PHKIQGPIKT IVVVVMENRS FDHILGWLKS  60
   61 TRPEIDGLTG KESNPLNVSD PNSKKIFVSD DAVFVDMDPG HSFQAIREQI FGSNDTSGDP 120
  121 KMNGFAQQSE SMEPGMAKNV MSGFKPEVLP VYTELANEFG VFDRWFASVP TSTQPNRFYV 180
  181 HSATSHGCSS NVKKDLVKGF PQKTIFDSLD ENGLSFGIYY QNIPATFFFK SLRRLKHLVK 240
  241 FHSYALKFKL DAKLGKLPNY SVVEQRYFDI DLFPANDDHP SHDVAAGQRF VKEVYETLRS 300
  301 SPQWKEMALL ITYDEHGGFY DHVPTPVKGV PNPDGIIGPD PFYFGFDRLG VRVPTFLISP 360
  361 WIEKGTVIHE PEGPTPHSQF EHSSIPATVK KLFNLKSHFL TKRDAWAGTF EKYFRIRDSP 420
  421 RQDCPEKLPE VKLSLRPWGA KEDSKLSEFQ VELIQLASQL VGDHLLNSYP DIGKNMTVSE 480
  481 GNKYAEDAVQ KFLEAGMAAL EAGADENTIV TMRPSLTTRT SPSEGTNKYI GSY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle