YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NOC4B_XENLA
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARKAKHAF RSQATQSDAE RQDLDSKLAA VLESRGNANA VFDILEHLES KKEDVVQAAI  60
   61 RTTSKLFEVL LEKRELYIGD LPAEDDSPPD TCSAEDKYKM WMRNRYNSCV SCLLDLLQYS 120
  121 SFSVQELVLC TLMKFIQLEG KFPLENSEWR DSYRFPRELL KFVVDNLLQE EADCTLLITR 180
  181 FQEYLEYDDV RYYTMTVTTE CVSRIQQKNK QVLPPVFQTN VFCLLSSINM PVEESTLGNF 240
  241 LVTKNENHEE WKPSKLKEQK RVFERVWMSF LKHQLSVSLY KKVLLILHES ILPHMSKPSL 300
  301 MIDFLTAAYD VGGAISLLAL NGLFILIHQH NLEYPDFYKK LYSLLEPSVF HVKYRARFFH 360
  361 LANLFLSSTH LPVYLVAAFA KRLARLALTA PPQVLLMIIP FICNLIRRHP ACRVLIHRPS 420
  421 AGDLVTDPYI MEEQDPAKSQ ALESCLWELE VLQQHYHGDV VRAANVISRA LSAQESDVSG 480
  481 LLEMSSCELF DKEMKKKFKS VPLEYEPVRG LLGLKSDITA EHFTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	304	0.51
Transmembrane Helix	305	327	0.77
Cytoplasmic	328	357	0.54
Transmembrane Helix	358	378	0.78
Non-Cytoplasmic	379	385	0.53
Transmembrane Helix	386	406	0.65
Cytoplasmic	407	525	0.76