YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STR4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALKTATFS PMSVLSEKRS EPRKPFSLPN LFPPKSQRPI SQESFLKRFN GGLALLTSVL  60
   61 SSATAPAKSL TYEEALQQSM TTSSSFDSDG LIEGISNFVT DNPLVIAGGV AALAVPFVLS 120
  121 QVLNKKPKSW GVESAKNAYT KLGTDDNAQL LDIRATADFR QVGSPNIKGL GKKAVSTVYN 180
  181 GEDKPGFLKK LSLKFKDPEN TTLYILDKFD GNSELVAELV ALNGFKSAYA IKDGAEGPRG 240
  241 WLNSSLPWIE PKKTLSLDLS SLTDSISGVF GESSDGVSVA LGVAAAAGLS VFAFTEIETI 300
  301 LQLLGSAALV QLAGKKLLFA EDRKQTLKQV DEFLNTKVAP KELVDELKEI GKALLPQSTS 360
  361 NKALPAPATV TAEAESATAT TTTVDKPVPE PETVAATTTT VDKPVPEPEP VPEPVPVPAI 420
  421 EAAVAAQVIT EPTETEAKPK PHSRPLSPYA SYPDLKPPSS PMPSQP

Type	Start	End	Confidence
Cytoplasmic	1	47	0.55
Transmembrane Helix	48	67	0.47
Non-Cytoplasmic	68	466	0.62