YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9295273
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.78
Transmembrane Helix	97	119	0.84
Non-Cytoplasmic	120	130	0.66
Transmembrane Helix	131	153	0.89
Cytoplasmic	154	165	0.64
Transmembrane Helix	166	180	0.67
Non-Cytoplasmic	181	181	0.15
Transmembrane Helix	182	196	0.58
Cytoplasmic	197	210	0.36
Transmembrane Helix	211	236	0.73
Non-Cytoplasmic	237	238	0.43
Transmembrane Helix	239	262	0.71
Cytoplasmic	263	273	0.65
Transmembrane Helix	274	294	0.93
Non-Cytoplasmic	295	310	0.61
Transmembrane Helix	311	330	0.70
Cytoplasmic	331	349	0.46
Transmembrane Helix	350	365	0.57
Non-Cytoplasmic	366	370	0.69
Transmembrane Helix	371	390	0.91
Cytoplasmic	391	404	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRVLSRAT AIAALPRLSR PRREAASLGI AAVKPVGAVK DGGNLIWGRQ LRPVLLLEPV  60
   61 QTGPVSRKES TAVQPCRAAA EGSDSAGEAK VGFLQKYPAL VTGFFFFMWY FLNVIFNILN 120
  121 KKIYNYFPYP YFVSVIHLLV GVIYCLVSWA VGLPKRAPID GNLLKLLIPV ALCHALGHVT 180
  181 SNVSFAAVAV SFTHTIKALE PFFNASASQF ILGQPIPITL WLSLAPVVLG VAMASLTELS 240
  241 FNWTGFISAM ISNISFTYRS IYSKKAMTDM DSTNVYAYIT IIALFVCIPP ALIIEGPQLI 300
  301 KYGFNDAIAK VGLTKFITDL FWVGMFYHLY NQLATNTLER VAPLTHAVGN VLKRVFVIGF 360
  361 SIIIFGNKIS TQTAIGTSIA IAGVAIYSFI KGKMEEEKRQ KKAA