YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S35A5_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.96
Transmembrane Helix	34	55	0.91
Non-Cytoplasmic	56	73	0.86
Transmembrane Helix	74	93	0.91
Cytoplasmic	94	112	0.73
Transmembrane Helix	113	135	0.75
Non-Cytoplasmic	136	139	0.58
Transmembrane Helix	140	160	0.89
Cytoplasmic	161	166	0.86
Transmembrane Helix	167	186	0.93
Non-Cytoplasmic	187	243	0.95
Transmembrane Helix	244	264	0.94
Cytoplasmic	265	284	0.91
Transmembrane Helix	285	302	0.95
Non-Cytoplasmic	303	318	0.74
Transmembrane Helix	319	339	0.92
Cytoplasmic	340	345	0.87
Transmembrane Helix	346	366	0.93
Non-Cytoplasmic	367	373	0.81
Transmembrane Helix	374	391	0.79
Cytoplasmic	392	440	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTMARYSS SSSSASSSSC GCCRPCSRIC SRSSAYTLAL GLGFVTLGTS RILLLKFSGN  60
   61 EENKYDYLPA SVNLMAEAIK LVFCLVMSVR VIIREGRSFK DLGCSSGASF LSYLKWSVPA 120
  121 FLYFLDNLII FYVIAYLQPA MAVLFSNIVI FTTAFLFRVV LKRRLSWVQW ASLIILFLSI 180
  181 VSLTTGNGDQ HAMAVHGLHP AHISTPSNSC LKYTHLHQVH QSHNESYWSR ELWDSQLIHK 240
  241 LNSFGLGYVL LLLQCFISAL ANIYNEKILK EGEQLVESIF IQNSKLYLFG LVFNSLTLLL 300
  301 HADYRNLTLH CGILYGHNVF SVALGFVTAA LGLSVAFILK FRDNMFHVLT GQITTVVVTA 360
  361 LSFFLFDFQP SMDFFMQAPV VLLSIFIYHS SKMKDPEYAL QQERLRVING EVFERSRGDG 420
  421 EELERLTKAN TESESEEESF