YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33637944
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDLFNVPI FFILFRETTE AAIIISVLLS FLKRMFNTES PVYKRLRNQV WIGGAAGLFI  60
   61 CLCIGAAFIA VYYTVLNDLW GNSEDIWEGV FSLVAVIMIT AMGLAMLKTE RMQEKWKVKL 120
  121 AKAMQKSNSE KSSFKEKLQK YAFFVLPFIT VLREGLEAVV FIGGVSLGIQ GKSIPIAAIM 180
  181 GIICGCLVGF LIYRGGSLIQ LRWFFVFSTV VLYLVAAGLM AKGVGYLEQN AWNQVIGGEA 240
  241 ADVISYRVST AVWHVSWGDP EANNDTSGGW QIFNAILGWN NTATYGSIIS YCLYWLFVCC 300
  301 YLVFSYFKEK RAAIRKAEAG EWDDGDEALE NAKQYIGNDG EFIVEDKESD EEANNHPKEK 360
  361 IESDAIKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.84
Transmembrane Helix	12	32	0.84
Cytoplasmic	33	49	0.90
Transmembrane Helix	50	72	0.93
Non-Cytoplasmic	73	85	0.89
Transmembrane Helix	86	107	0.90
Cytoplasmic	108	140	0.96
Transmembrane Helix	141	165	0.86
Non-Cytoplasmic	166	173	0.79
Transmembrane Helix	174	193	0.96
Cytoplasmic	194	202	0.80
Transmembrane Helix	203	224	0.92
Non-Cytoplasmic	225	282	0.98
Transmembrane Helix	283	307	0.88
Cytoplasmic	308	368	0.99