YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20086228
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLNNNFAR VTCMSCPSHC EVKPNASLRV SFCQEYCFCT WPEASRYFSL GIMEGLLKQQ  60
   61 YHYLYLGCVF VDFSISYLRF FTDKKWLDYL YETKLKIVLV CDRHLRPLAN YWYKHHKDIF 120
  121 LIIYQQDNLK SAGDKLKKRF IYQRDAFFHG LSLSTLEFDV LGALIAGEDC NHLARGRHLD 180
  181 IRAVYAAKRR AEKKMGADIN TPCIISPTQI GRYIMKGWLF LVIAIVGEVI ATSALKSSEG 240
  241 FTKLAPSAVV IIGYGIAFYF LSLVLKSIPV GVAYAVWSGL GVVIITAIAW LLHGQKLDAW 300
  301 GFVGMGLIIA AFLLARSPSW KSLRRPTPW

Type	Start	End	Confidence
Cytoplasmic	1	213	0.86
Transmembrane Helix	214	235	0.88
Non-Cytoplasmic	236	243	0.77
Transmembrane Helix	244	263	0.95
Cytoplasmic	264	270	0.79
Transmembrane Helix	271	292	0.92
Non-Cytoplasmic	293	298	0.80
Transmembrane Helix	299	320	0.88
Cytoplasmic	321	329	0.97