YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21655303, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMDDKDKYR EVVEHWSCEG TSPALMVGDS TEITEMLSPS QHQRWRGLVL DIQSREAHGD  60
   61 FLRANGSLIH SPVSKRFKFS PMSSPRTGRR VGSMSPSSSR NRTNQKNFKN RNHSADIEEG 120
  121 VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG 180
  181 ERLLPIRRTR SVPTFFNKDG SVKPSSVFRV IPTPSRGDEK RLEMTQASKL NENDDGGEDV 240
  241 PEEEAVCRIC MVEMEEDEEA FKMECMCKGE LALAHKTCTI KWFTIKGNIT CDVCKQEVRN 300
  301 LPVTLLRVQD SQNRSRAARD IEISRFNNVW QDIPILVIVS MLAYFCFLEQ LLIIDMKSSA 360
  361 VAIALPFSCI IGLLASMIST TMVKKNYVWI YATVQFGFVV LFAQLFYRVV RFDVKQPVMC 420
  421 IVLATMIGFG LTMTGTTAIN EYLKWRRSNS HLPEEPASTQ VV

Type	Start	End	Confidence
Non-Cytoplasmic	1	328	0.63
Transmembrane Helix	329	353	0.79
Cytoplasmic	354	359	0.53
Transmembrane Helix	360	381	0.91
Non-Cytoplasmic	382	386	0.54
Transmembrane Helix	387	410	0.87
Cytoplasmic	411	417	0.56
Transmembrane Helix	418	439	0.92
Non-Cytoplasmic	440	462	0.59