YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40287444
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSSPHHEV NGGRSDEERR AVASKVCGEA PCGFSDAKNV SGDTKERNAS MRKLCIAVVL  60
   61 CLVFMSVEIV GGIKANSLAI MTDAAHLLSD VAAFAISLFA LWAAGWEATP RQTYGFFRIE 120
  121 ILGALVSIQL IWLLTGILVY EAISRLLTET SEVNGFLMFA VATFGLLVNI IMAVMLGHDH 180
  181 GHSHGHGHDH ENHSHGVTVT THDHDPTHDH DHDHDHDDGH GHSHGEDNQD EAHGDVTEQL 240
  241 LEKPKQEKEK KKRNINLQGA YLHVLGDSIQ SVGVMIGGAA IWYNPKWKII DLICTLAFSV 300
  301 IVLGTTINMI RNILEVLMES TPREIDATKL EKGLLEMEGV VAVHELHIWA ITVGKVLLAC 360
  361 HVNVTPQADA DMVLNKVVDY IRREYNISHV TIQIER

Type	Start	End	Confidence
Cytoplasmic	1	53	0.99
Transmembrane Helix	54	75	0.92
Non-Cytoplasmic	76	83	0.85
Transmembrane Helix	84	106	0.89
Cytoplasmic	107	115	0.89
Transmembrane Helix	116	139	0.84
Non-Cytoplasmic	140	155	0.84
Transmembrane Helix	156	177	0.93
Cytoplasmic	178	259	0.98
Transmembrane Helix	260	282	0.91
Non-Cytoplasmic	283	288	0.84
Transmembrane Helix	289	310	0.92
Cytoplasmic	311	396	0.95