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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|31339070
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNSNTLTNK WRMEQCLRCS QPSGTCLNGG RCEVANGTEA CVCSGAFVGQ RCQDSNPCLS  60
   61 TPCKNAGTCH VVDHGGTVDY ACSCPLGFSG PLCLTPLDNA CLANPCRNGG TCDLLTLTEY 120
  121 KCRCPPGWSG KSCQQADPCA SNPCANGGQC LPFESSYICR CPPGFHGPTC RQDVNECSQN 180
  181 PGLCRHGGTC HNEIGSYRCA CRATHTGPHC ELPYVPCSPS PCQNGGTCRP TGDTTHECAC 240
  241 LPGFAGQNCE ENVDDCPGNN CKNGGACVDG VNTYNCRCPP EWTGQYCTED VDECQLMPNA 300
  301 CQNGGTCHNT HGGYNCVCVN GWTGEDCSEN IDDCASAACF QGATCHDRVA SFYCECPHGR 360
  361 TGLLCHLNDA CISNPCNEGS NCDTNPVNGK AICTCPSGYT GPACSQDVDE CALGANPCEH 420
  421 AGKCLNTLGS FECQCLQGYT GPRCEIDVNE CISNPCQNDA TCLDQIGEFQ CICMPGYEGV 480
  481 YCEINTDECA SSPCLHNGHC MDKINEFQCQ CPKGFNGHLC QYDVDECAST PCKNGAKCLD 540
  541 GPNTYTCVCT EGYTGTHCEV DIDECDPDPC HYGSCKDGVA TFTCLCQPGY TGHHCETNIN 600
  601 ECHSQPCRHG GTCQDRDNSY LCLCLKGTTG PNCEINLDDC ASNPCDSGTC LDKIDGYECA 660
  661 CEPGYTGSMC NVNIDECAGS PCHNGGTCED GIAGFTCRCP EGYHDPTCLS EVNECNSNPC 720
  721 IHGACRDGLN GYKCDCAPGW SGTNCDINNN ECESNPCVNG GTCKDMTSGY VCTCREGFSG 780
  781 PNCQTNINEC ASNPCLNQGT CIDDVAGYKC NCPLPYTGAT CEVVLAPCAT SPCKNSGVCK 840
  841 ESEDYESFSC VCPTGWQGQT CEVDINECVK SPCRHGASCQ NTNGSYRCLC QAGYTGRNCE 900
  901 SDIDDCRPNP CHNGGSCTDG INTAFCDCLP GFQGAFCEED INECASNPCQ NGANCTDCVD 960
  961 SYTCTCPVGF NGIHCENNTP DCTESSCFNG GTCVDGINSF TCLCPPGFTG SYCQYDVNEC1020
 1021 DSRPCLHGGT CQDSYGTYKC TCPQGYTGLN CQNLVRWCDS APCKNGGRCW QTNTQYHCEC1080
 1081 RSGWTGVNCD VLSVSCEVAA QKRGIDVTLL CQHGGLCVDE GDKHYCHCQA GYTGSYCEDE1140
 1141 VDECSPNPCQ NGATCTDYLG GFSCKCVAGY HGSNCSEEIN ECLSQPCQNG GTCIDLTNSY1200
 1201 KCSCPRGTQG VHCEINVDDC HPPLDPASRS PKCFNNGTCV DQVGGYTCTC PPGFVGERCE1260
 1261 GDVNECLSNP CDPRGTQNCV QRVNDFHCEC RAGHTGRRCE SVINGCRGKP CKNGGVCAVA1320
 1321 SNTARGFICR CPAGFEGATC ENDARTCGSL RCLNGGTCIS GPRSPTCLCL GSFTGPECQF1380
 1381 PASSPCVGSN PCYNQGTCEP TSENPFYRCL CPAKFNGLLC HILDYSFTGG AGRDIPPPQI1440
 1441 EEACELPECQ VDAGNKVCNL QCNNHACGWD GGDCSLNFND PWKNCTQSLQ CWKYFSDGHC1500
 1501 DSQCNSAGCL FDGFDCQLTE GQCNPLYDQY CKDHFSDGHC DQGCNSAECE WDGLDCAEHV1560
 1561 PERLAAGTLV LVVLLPPDQL RNNSFHFLRE LSHVLHTNVV FKRDAQGQQM IFPYYGHEEE1620
 1621 LRKHPIKRST VGWATSSLLP GTSGGRQRRE LDPMDIRGSI VYLEIDNRQC VQSSSQCFQS1680
 1681 ATDVAAFLGA LASLGSLNIP YKIEAVKSEP VEPPLPSQLH LMYVAAAAFV LLFFVGCGVL1740
 1741 LSRKRRRQHG QLWFPEGFKV SEASKKKRRE PLGEDSVGLK PLKNASDGAL MDDNQNEWGD1800
 1801 EDLETKKFRF EEPVVLPDLS DQTDHRQWTQ QHLDAADLRM SAMAPTPPQG EVDADCMDVN1860
 1861 VRGPDGFTPL MIASCSGGGL ETGNSEEEED APAVISDFIY QGASLHNQTD RTGETALHLA1920
 1921 ARYSRSDAAK RLLEASADAN IQDNMGRTPL HAAVSADAQG VFQILLRNRA TDLDARMHDG1980
 1981 TTPLILAARL AVEGMLEDLI NSHADVNAVD DLGKSALHWA AAVNNVDAAV VLLKNGANKD2040
 2041 MQNNKEETPL FLAAREGSYE TAKVLLDHFA NRDITDHMDR LPRDIAQERM HHDIVRLLDE2100
 2101 YNLVRSPQLH GTALGGTPTL SPTLCSPNGY LGNLKSATQG KKARKPSTKG LACGSKEAKD2160
 2161 LKARRKKSQD GKGCLLDSSS MLSPVDSLES PHGYLSDVAS PPLLPSPFQQ SPSMPLSHLP2220
 2221 GMPDTHLGIS HLNVAAKPEM AALAGGSRLA FEPPPPRLSH LPVASSASTV LSTNGTGAMN2280
 2281 FTVGAPASLN GQCEWLPRLQ NGMVPSQYNP LRPGVTPGTL STQAAGLQHS MMGPLHSSLS2340
 2341 TNTLSPIIYQ GLPNTRLATQ PHLVQTQQVQ PQNLQLQPQN LQPPSQPHLS VSSAANGHLG2400
 2401 RSFLSGEPSQ ADVQPLGPSS LPVHTILPQE SQALPTSLPS SMVPPMTTTQ FLTPPSQHSY2460
 2461 SSSPVDNTPS HQLQVPEHPF LTPSPESPDQ WSSSSPHSNI SDWSEGISSP PTTMPSQITH2520
 2521 IPEAFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle