YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16265496
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.99
Transmembrane Helix	14	36	0.92
Non-Cytoplasmic	37	58	0.88
Transmembrane Helix	59	82	0.91
Cytoplasmic	83	100	0.89
Transmembrane Helix	101	122	0.92
Non-Cytoplasmic	123	145	0.86
Transmembrane Helix	146	168	0.90
Cytoplasmic	169	181	0.91
Transmembrane Helix	182	205	0.91
Non-Cytoplasmic	206	241	0.91
Transmembrane Helix	242	261	0.93
Cytoplasmic	262	269	0.81
Transmembrane Helix	270	291	0.91
Non-Cytoplasmic	292	301	0.90
Transmembrane Helix	302	326	0.83
Cytoplasmic	327	336	0.87
Transmembrane Helix	337	358	0.94
Non-Cytoplasmic	359	375	0.87
Transmembrane Helix	376	398	0.91
Cytoplasmic	399	410	0.81
Transmembrane Helix	411	430	0.92
Non-Cytoplasmic	431	450	0.87
Transmembrane Helix	451	472	0.91
Cytoplasmic	473	516	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AITRWFFSTN HKDIGTLYLV FGAWAGMVGT ALSLLIRAEL SQPGALLGDD QIYNVIVTAH  60
   61 AFVMIFFMVM PIMIGGFGNW LIPLMIGAPD MAFPRMNNMS FWLLPPSFVL LLASSGVEAG 120
  121 AGTGWTVYPP LAGNLAHAGA SVDLTIFSLH LAGVSSILGA INFITTIINM KPPAVSQYQT 180
  181 PLFVWAVLIT AVLLLLSLPV LAAGITMLLT DRNLNTTFFD PAGGGDPILY QHLFWPHPVP 240
  241 EVYILILPGF GMISHIVAYY AGKKEPFGYM GMVWAMMAIG LLGFIVWAHH MFTVGMDVDT 300
  301 RAYFTSATMI IAIPTGVKVF SWLATLHGGA IKWETPLLWS LGFIFLFTVG GLTGIVLANS 360
  361 SLDIMLHDTY YVVAHFHYVL SMGAVFAIMA GFVHWFPLLS GYTLHSTWSK IHFGVMFLGV 420
  421 NLTFFPQHFL GLAGMPRRYS DYPDAYTLWN TVSSLGSLIS LTAVIMFLFI LWEAFAAKRE 480
  481 VLSVELTTTN VEWLHGCPPP YHTFEEPAFV QVQSAN