YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAX5_MEDTR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.71
Transmembrane Helix	44	61	0.63
Non-Cytoplasmic	62	75	0.73
Transmembrane Helix	76	98	0.89
Cytoplasmic	99	134	0.93
Transmembrane Helix	135	160	0.84
Non-Cytoplasmic	161	167	0.89
Transmembrane Helix	168	186	0.93
Cytoplasmic	187	193	0.68
Transmembrane Helix	194	214	0.89
Non-Cytoplasmic	215	227	0.86
Transmembrane Helix	228	249	0.87
Cytoplasmic	250	263	0.84
Transmembrane Helix	264	288	0.89
Non-Cytoplasmic	289	309	0.97
Transmembrane Helix	310	333	0.90
Cytoplasmic	334	348	0.97
Transmembrane Helix	349	370	0.91
Non-Cytoplasmic	371	375	0.84
Transmembrane Helix	376	397	0.92
Cytoplasmic	398	416	0.92
Transmembrane Helix	417	439	0.92
Non-Cytoplasmic	440	490	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMANDKVAE TVIVGNYVEM ESEGKPPQDI KSKLSNFLWH GGSAYDAWFS CASNQVAQVL  60
   61 LTLPYSFSQL GMLSGILFQL FYGILGSWTA YLISILYVEY RTRKEREKVN FRSHVIQWFE 120
  121 VLDGLLGKHW RNVGLGFNCT FLLFGSVIQL IACASNIYYI NDNLDKRTWT YIFGACCATT 180
  181 VFIPSFHNYR IWSFLGLVMT TYTAWYLTIA AVLHGQVEGV KHSGPNKIIL YFTGATNILY 240
  241 TFGGHAVTVE IMHAMWKPQK FKAIYLLATL YVLTLTIPSA TAVYWAFGDM LLNHSNAFAL 300
  301 LPKSPFRDMA VILMLIHQFI TFGFACTPLY FVWEKTVGMH ECKSLCKRAL VRLPVVIPIW 360
  361 FLAIIFPFFG PINSTVGSLL VSFTVYIIPA LAHIFTFKSS SARQNAVEQP PKFVGRWVGT 420
  421 FVINVFIVVW VLIVGFGFGG WASMVNFVHQ IDTFGLFTKC YQCPPPTPSV PTMPPHQMNA 480
  481 TAPSPHHHHH