YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACFR1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVRINAMAV TFVAHALAVI AAIMVLVWSI SYRGGLAWEA TNKNLIFNLH PVLMLIGFII  60
   61 LGGEAIISYK SLPLEKPVKK LIHLILHAIA LALGIFGICA AFKNHNESHI PNLYSLHSWI 120
  121 GIGVISLYGF QWVYSFIVFF FPGGSTNLKS GLLPWHAMLG LFVYILAVGN AALGFLEKLT 180
  181 FLENGGLDKY GSEAFLINFT AIITILFGAF VVLTASAESP SPSPSVSNDD SVDFSYSAI

Type	Start	End	Confidence
Cytoplasmic	1	8	0.71
Transmembrane Helix	9	32	0.88
Non-Cytoplasmic	33	46	0.72
Transmembrane Helix	47	69	0.87
Cytoplasmic	70	80	0.67
Transmembrane Helix	81	102	0.92
Non-Cytoplasmic	103	118	0.66
Transmembrane Helix	119	141	0.86
Cytoplasmic	142	151	0.66
Transmembrane Helix	152	176	0.86
Non-Cytoplasmic	177	193	0.72
Transmembrane Helix	194	215	0.93
Cytoplasmic	216	239	0.74