YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18874365
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAIILTHIL NPLAYIVPVL LAVAFLTLLE RKVLGYMQLR KGPNVVGPYG LLQPIADGVK  60
   61 LFIKEPVRPS TASPVLFLVA PILALTLALT LWAPMPLPHP VADLNLNILF ILALSSLAVY 120
  121 SILGSGWASN SKYALIGALR AVAQTISYEV SLGLILLSVI IFTGGFTLQT FSTAQESIWL 180
  181 LFPAWPLAAM WYISTLAETN RAPFDLTEGE SELVSGFNVE YAGGPFALFF LAEYANILLM 240
  241 NTLSATLFLG ASHLPHFPEI TSINLMAKAA FLSVMFLWVR ASYPRFRYDQ LMHLIWKNFL 300
  301 PLTLALVIWH LALPLALVGL PPQA

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.81
Transmembrane Helix	8	29	0.87
Cytoplasmic	30	71	0.87
Transmembrane Helix	72	93	0.91
Non-Cytoplasmic	94	107	0.78
Transmembrane Helix	108	129	0.91
Cytoplasmic	130	145	0.88
Transmembrane Helix	146	168	0.87
Non-Cytoplasmic	169	176	0.76
Transmembrane Helix	177	196	0.89
Cytoplasmic	197	229	0.79
Transmembrane Helix	230	251	0.69
Non-Cytoplasmic	252	259	0.69
Transmembrane Helix	260	281	0.86
Cytoplasmic	282	293	0.88
Transmembrane Helix	294	318	0.81
Non-Cytoplasmic	319	324	0.82