YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18874361
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIILTHVL NPLAYIVPVL LAVAFLTLLE RKVLGYMQLR KGPNVVGPYG LLQPIADGVK  60
   61 LFIKEPIRPS TASPLLFLLA PILALTLALT LWAPIPLPHP VTDLNLSILF ILALSSLAVY 120
  121 SILGSGWASN SKYALIGALR AVAQTISYEV SLGLILLSAI IFTGGFTLQT FSTAQESIWL 180
  181 LFPAWPLAAM WYISTLAETN RAPFDLTEGE SELVSGFNVE YAGGPFALFF LAEYANILLM 240
  241 NTLSATLFLG ASHFPHFPEV TSINLMTKAA FLSVLFLWVR ASYPRFRYDQ LMHLIWKNFL 300
  301 PLTLALVIWH LALPLALAGL PPQT

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.83
Transmembrane Helix	8	29	0.85
Cytoplasmic	30	73	0.87
Transmembrane Helix	74	95	0.92
Non-Cytoplasmic	96	105	0.86
Transmembrane Helix	106	128	0.90
Cytoplasmic	129	145	0.87
Transmembrane Helix	146	168	0.87
Non-Cytoplasmic	169	176	0.77
Transmembrane Helix	177	196	0.89
Cytoplasmic	197	229	0.82
Transmembrane Helix	230	251	0.70
Non-Cytoplasmic	252	259	0.69
Transmembrane Helix	260	281	0.85
Cytoplasmic	282	297	0.80
Transmembrane Helix	298	318	0.89
Non-Cytoplasmic	319	324	0.83