YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16265582
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAIILTHVL NPLAYIVPVL LAVAFLTLLE RKVLGYMQLR KGPNVVGPYG LLQPIADGVK  60
   61 LFIKEPVRPS TSSPVLFLLA PILALTLALT LWAPIPLPHP VADLNLSILF ILALSSLAVY 120
  121 SILGSGWASN SKYALIGALR AVAQTISYEV SLGLILLSAV IFTGGFTLQT FSVAQESIWL 180
  181 LFPAWPLAAM WYISTLAETN RAPFDLTEGE SELVSGFNVE YAGGPFALFF LAEYANILLM 240
  241 NTLSATLFLG ASHFPHLPEI TSVNLMTKAA FLSVLFLWVR ASYPRFRYDQ LMHLIWKNFL 300
  301 PLTLALVIWH LALPLALAGL PPQS

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.82
Transmembrane Helix	8	29	0.85
Cytoplasmic	30	73	0.87
Transmembrane Helix	74	95	0.92
Non-Cytoplasmic	96	105	0.83
Transmembrane Helix	106	128	0.90
Cytoplasmic	129	144	0.88
Transmembrane Helix	145	168	0.85
Non-Cytoplasmic	169	176	0.74
Transmembrane Helix	177	196	0.88
Cytoplasmic	197	229	0.80
Transmembrane Helix	230	251	0.70
Non-Cytoplasmic	252	259	0.68
Transmembrane Helix	260	281	0.84
Cytoplasmic	282	298	0.77
Transmembrane Helix	299	318	0.90
Non-Cytoplasmic	319	324	0.82