YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33411128
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.39
Transmembrane Helix	30	57	0.80
Cytoplasmic	58	76	0.45
Transmembrane Helix	77	101	0.79
Non-Cytoplasmic	102	111	0.45
Transmembrane Helix	112	133	0.91
Cytoplasmic	134	139	0.42
Transmembrane Helix	140	158	0.70
Non-Cytoplasmic	159	177	0.68
Transmembrane Helix	178	200	0.93
Cytoplasmic	201	228	0.68
Transmembrane Helix	229	247	0.91
Non-Cytoplasmic	248	287	0.73
Transmembrane Helix	288	308	0.91
Cytoplasmic	309	319	0.76
Transmembrane Helix	320	340	0.90
Non-Cytoplasmic	341	347	0.76
Transmembrane Helix	348	371	0.89
Cytoplasmic	372	379	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLRKTHPL MKIINNSFID LPAPSNISSW WNFGSLLGVC LIIQILTGLF LAMHYTADTL  60
   61 TAFSSVTHIC RDVNYGWLIR YLHANGASMF FICLFLHVGR GLYYGSYMFM ETWNIGVVLL 120
  121 FAVMATAFMG YVLPWGQMSF WGATVITNLL SAIPYIGTDL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIA ALAGVHLLFL HETGSNNPSG LVSDADKIPF HPYYTIKDIL GVLILLLVLM 240
  241 LLVLFSPDLL GDPDNYTPAN PLNTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALVMSILI 300
  301 LAIIPMLHTS KQRSMMFRPI SQCLFWILVA DLLILTWIGG QPVEHPFIII GQLASVLYFL 360
  361 LILVLMPLAS IMENNFLKW