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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cbd-1
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPQLATVSL LLLTFFSNSI QYPHSPAATE CPAYFNGNIA GNACSREYSI CVNGVRQAAT  60
   61 CSDDSVFYED ECVPVDESPE CRVDENTEED DTPYAEFDCT SKQDGIYSIG CSNQFISCVA 120
  121 GGAYMAKCPD SLVFNERTQD CRESCDEVKQ DTTTAPQVYE DGEEGYGEAS GEIAGDYERQ 180
  181 PSNEQPDSID FDCNGLEDGN YADGCNDVFY SCSNNMVFQR YCPPGTVFNI NQQSCDFQCT 240
  241 TDDPTTTVSY STSTITTPQE DDSEYSSTTS ADVISTTTTP SIDAIETTTT GFDAVTTTTT 300
  301 TQTPFVCQEG QVNSFGMCSS RFNRCQNNSV RSKQCPVNTL FESSLVMCVF DLPQCQPITV 360
  361 PAAPAYNSYG PPSDTIVSPF DENVRLKPKF DRRRKYHHGK PSYGPVNGNS YLENPFFIPR 420
  421 HRGGSHRDHR RYGYGPAIDS PFSTAFRGRA ALSDQFKDYR RARMGKIQGD ARKVDGNKRF 480
  481 LIDDEFEGPN AKFVESNIEQ VFPKNRHSKK QLGPHEDPDG YDDEKTFDAK DLFGATRRKR 540
  541 SAYYGTEQSV YGQQSAQISA RQAQVNKDCQ QYTTPTFLTF GDCFDQFIFC SGNGINRMAA 600
  601 CPIGETFDKT LRSCSETCGV STTIVAVTIG TQTSDDLSAP SEYIENDGVT TQSTWNDQPS 660
  661 TTQAPNSYES YTTQYSSNDV PSTSAAPIGD RCSLDASGLF SLGCSQKYIQ CSNGAAIVRR 720
  721 CGESLYFNEA TQECTYRDEV PECGSQGSTS SPVITTPGQD QSSNYYGIPS DDVPSTTQTP 780
  781 VGDRCAYVAS GLFDLGCSQK YIQCSDSAAS VRECEGSLYF DERSQSCRFR DEVFKCQTAD 840
  841 VSSSSTVPYL DFTTTPASPS EDEPTTYEPS VAPYIPSVTV NPVDTCTSLS DGTHGTGCSS 900
  901 FYFVCSHGRL ISSGNCQLGE GYDPSVQGCR TFSEIPARAC DEQEVTTDAG LVQLMPYKTL 960
  961 EEVLTTTEAA TTVANDGPTD TYITGSTKYS TTDSGEYTIP YGDETTSTRS YDRADNDSED1020
 1021 EEEDDVEHDQ KCTVGSRTPV GFCVRTYLEC TDAGNVEKLC RIGKLFDSHS NRCVPRIGCG1080
 1081 KEAIRDAIKD MIATTPAPAQ PKQFEGRCAH VDGEAVFSIG VCSSKYLRCS YGASKLQQCS1140
 1141 EDRVFSNDKL ECIVRESVSA CTVPKNPSIK KYYTSNDQSA FCDGKEDGLY RNERDCSAIL1200
 1201 QCFGGELFEH PSCQSSLAFN QLTGKCDYPQ KVSGCENHGQ TNGECSEHGS FIADANNCEV1260
 1261 FYRCVWGRKV VMTCPSGTVF NPLLSVCDWP SAVPSCSGQA SDSNSSYGSS TYNDDKSGY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle