YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6166503
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	497	0.70
Transmembrane Helix	498	519	0.63
Non-Cytoplasmic	520	545	0.91
Transmembrane Helix	546	566	0.91
Cytoplasmic	567	584	0.82
Transmembrane Helix	585	605	0.94
Non-Cytoplasmic	606	616	0.76
Transmembrane Helix	617	642	0.88
Cytoplasmic	643	674	0.93
Transmembrane Helix	675	694	0.55
Non-Cytoplasmic	695	745	0.55
Transmembrane Helix	746	760	0.59
Cytoplasmic	761	761	0.04
Transmembrane Helix	762	776	0.58
Non-Cytoplasmic	777	1354	0.56
Transmembrane Helix	1355	1378	0.76
Cytoplasmic	1379	1418	0.53
Transmembrane Helix	1419	1437	0.91
Non-Cytoplasmic	1438	1453	0.48
Transmembrane Helix	1454	1487	0.57
Cytoplasmic	1488	1500	0.34
Transmembrane Helix	1501	1529	0.50
Non-Cytoplasmic	1530	1530	0.37
Transmembrane Helix	1531	1551	0.80
Cytoplasmic	1552	1620	0.85
Transmembrane Helix	1621	1643	0.88
Non-Cytoplasmic	1644	1660	0.72
Transmembrane Helix	1661	1687	0.83
Cytoplasmic	1688	1699	0.65
Transmembrane Helix	1700	1721	0.86
Non-Cytoplasmic	1722	1730	0.70
Transmembrane Helix	1731	1754	0.82
Cytoplasmic	1755	1766	0.85
Transmembrane Helix	1767	1786	0.80
Non-Cytoplasmic	1787	1803	0.87
Transmembrane Helix	1804	1825	0.86
Cytoplasmic	1826	1859	0.95
Transmembrane Helix	1860	1881	0.95
Non-Cytoplasmic	1882	1961	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKAATAPV APATPPSLQK PCRQLQLSYD YNYDYQQPGQ QGGDGQHNGQ NQQHPGQQEY  60
   61 YDDYYDDGYG NQYGAQEGYQ EGVDQHGNPY QHDPHAGVAA ATSGGYRNVK DDGSETFSDF 120
  121 TEQNGQGYNQ YNQGYNQGQY NQGYQGQYNQ GYGGYDQYGQ YNDASQISFR SSGASTPIYG 180
  181 LDYAASQQGI GAGSGHSREP YPAWSADNQV PVTKEEIEDV FIDLTNKFGF QRDSMRNMYD 240
  241 FLMVLLDSRS SRMTPNQALL SLHADYIGGD NANYRKWYFA AQLDLDDDIG FRNMKLGKTN 300
  301 NKRTRKARKK FRKEMQDPDA DPAKTLEEIE GDNSLEAAEY RWKTKMNALS PLERVRHIAL 360
  361 WLLCWGEANQ VRFTPECLCF IFKCADDYYT SAECQQRVEP VEEGDYLNRI ITPLYRFIRG 420
  421 QGYEIFDGKF VKRERDHNKV IGYDDVNQLF WYPEGIERIT FEDESRLVDV PQSERYMKLG 480
  481 DVIWDKVFFK TYKETRSWFH VFVNFNRIWI IHVTFYWYYA SFNSPTLYMK NYVPTLDNHP 540
  541 PPACKWGAGA IGGVIATGLQ IIATLSEWAF VPRKWAGAQH LTRRLMFLIG ILIVNLVAPV 600
  601 YVLGVVGTTH ESTSALAVGI VGFIISIFTF IFFSIMPLGG LFTSYMKKST RRYVASQTFT 660
  661 NSYPRLEFHD KIMSYLLWVC VFGAKLSESY YFLILSLRDP IRDLSQMKMR CFGQKWFGVE 720
  721 YHDALCKVQP QITLGLMYAT DLILFFLDTY LWYIICNTIF SVARSFYLGI SIWTPWRNIF 780
  781 SRLPKRIYSK ILATTDMEIK YKPKVLISQI WNAIVISMYR EHLLAIEHVQ KLLYHQVPSE 840
  841 VEGKRTLRAP TFFITQDDHA FETEFFPRNS EAERRISFFA QSLSTPIPEP LPVDNMPTFS 900
  901 VLVPHYSEKI LLSLREIIRE DDQFSRVTLL EYLKQLHPVE WDCFVKDTKI LAEETAGFGE 960
  961 GSNDDLAEKD SDEVKAKIDD LPFYCIGFKS AAPEYTLRTR IWASLRSQTL YRTVSGFMNY1020
 1021 SRAIKLLYRV ENPEVVQMFG GNTEKLEREL ERMARRKFKF IVSMQRLTKF KPDEMENTEF1080
 1081 LLRAYPDLQI AYLDEEPPLN EGEEPRLFSA LIDGHCEILE NGRRRPKFRI QLSGNPILGD1140
 1141 GKSDNQNHAL IFHRGEYIQL IDANQDNYLE ECLKIRSVLA EFEELNVENV NMSPYTPGVN1200
 1201 NKTPCPVAIL GAREYIFSEN IGILGDIAAG KEQTFGTLFA RTLAQIGGKL HYGHPDFLNS1260
 1261 IFMCTRGGVS KAQKGLHLNE DIYAGMNALL RGGRIKHCEY YQCGKGRDLG FGSILNFTTK1320
 1321 IGTGMGEQML SREYYYLGTQ LPLDRFLSFF YAHPGFHINN LLIITSVQMF MIVMMSIGPL1380
 1381 AHETKETICW YDKDKPITDP QTPVGCYNLK PVLDWIRRCV LSIFIVFFIS FVPLVVQELT1440
 1441 ERGVFRAAFR FARHFMSLSP LFEVFVCHVY ANSFINDLAF GGARYIATGR GFATARLPFS1500
 1501 VLYSRFAGDS IYLGARSTLM LLFGTIAMWQ AALLWFWVTL IAMCISPFVF NPHQFAWTDF1560
 1561 FIDYRDFIRW LSRGNAKWHK NSWIGYVRLT RTRITGYKRK VLGDESEKGA GDLSRAGISN1620
 1621 VFITEIFLPL IVAAFCFCGF TFINAQTGVA EPVIVNSILR IVICAIGPIV INAGLLLVLV1680
 1681 CISCCAGPML GLCCKKTGPV MAGIAHGIAV IIHLIFFELM WFFEGWSFVK GLCGTVTAIA1740
 1741 IMRLIFNILT ILCLTREFKH DHANQAWWTG KWYGAGLGWA SISQPFREFV CKLIEMSLFA1800
 1801 GDFYLGHWLL FFQLPVLCVP YIDKWHSMML FWLRPSRQIR PPIFSLKQNQ LRKRIVKKYA1860
 1861 TLYFIILIIF LVVLIAPAVA GPTMSMDSLE SLAGGKADND SIQDTNILKG LIQVRSQNQN1920
 1921 DTGRCSTGNG TECLLPTTGS WSTHVWWTFT PSHTTSYSTK P