YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21483558
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAVKDVASF VLVIQKHPKL VTYKAQAYNI KCVYQTGEKN VTLGFNVSML TTAGTIANTG  60
   61 PPPICQMRII TNEGEEINSA EIGDNLKLQV DVEPATIYGG FARSCIAKTM EDNVQNEYLV 120
  121 TDENGCATDT SIFGNWEYNP DTNSLLASFN AFKFPSSDNI RFQCNIRVCF GRCQPVNCGG 180
  181 YNAFGRRRRS IADNSTDATA IATNSGVEGQ LREEITISSN AILTFEKRSG QGLNDANIKP 240
  241 AAQRVEDICV SMVGLIIALV ITALLALVAV AVAVSCWLMA YRRRPKTIAP LPHPPEFPNP 300
  301 LFSNPDAVPE PTPDYIS

Type	Start	End	Confidence
Non-Cytoplasmic	1	252	0.88
Transmembrane Helix	253	278	0.90
Cytoplasmic	279	317	0.87