YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21483546
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILFRALLSRK QNRNKFSIFH AKLAQIRTTM LMSRALCRSW LPQVARRCHA NVNVPILRIN  60
   61 SGHPAARSCR QIHSNRKQSS NLKPTTGEPA AAEQNTPVPV NNVIKAVAFT GAFTVGCFAG 120
  121 ATILEYENTR SLILEKARQA RFGWWQSRSL ADRDYWTQIK QDIRRHWDSL TPGDKMFAPI 180
  181 LLCNLVAFAM WRVPALKSTM ITYFTSNPAA KVVCWPMFLS TFSHYSAMHL FANMYVMHSF 240
  241 ANAAAVSLGK EQFLAVYLSA GVFSSLMSVL YKAATSQAGM SLGASGAIMT LLAYVCTQYP 300
  301 DTQLSILFLP ALTFSAGAGI KVLMGIDFAG VVMGWKFFDH AAHLGGAMFG IFWATYGAQI 360
  361 WAKRIGLLNY YHDLRRTKQK

Type	Start	End	Confidence
Cytoplasmic	1	175	0.67
Transmembrane Helix	176	195	0.87
Non-Cytoplasmic	196	211	0.54
Transmembrane Helix	212	246	0.59
Cytoplasmic	247	252	0.59
Transmembrane Helix	253	271	0.81
Non-Cytoplasmic	272	277	0.52
Transmembrane Helix	278	297	0.89
Cytoplasmic	298	305	0.68
Transmembrane Helix	306	325	0.90
Non-Cytoplasmic	326	339	0.68
Transmembrane Helix	340	362	0.87
Cytoplasmic	363	380	0.84