YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21483424
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NECSASFRFS EKVFTVFAGC IVPNHFAMAP PENGILEVLE NLLDRYKINL LQMMFGTFIA  60
   61 TIVFFGGLMT FVEKYLPNSI RQSFRYGKHS FKGETDPLVA WLEVPKSWFK HFYTFALFWS 120
  121 WLAFYVLVST VREQKEAPEY VLQFLDIMGG GRSHRKVEID STTACVGAFM LTLQCTRRFY 180
  181 ETNFVQIFSK KSKINLSHYA VGYVHYFGAV IALLSNTSGF VRGSKPMEFS LDKLTSQQIL 240
  241 YLGVFFLAWQ QQYASNMILV NLRKDPRTGS VKTEKHLLPK GGLFNLLSSP HMFLEVVMYF 300
  301 CIADLYMPVR IWRLIFLWVA SNQTINALLT HKWYQETFRE YPKNRRAIIP FLL

Type	Start	End	Confidence
Cytoplasmic	1	49	0.79
Transmembrane Helix	50	72	0.88
Non-Cytoplasmic	73	108	0.76
Transmembrane Helix	109	128	0.88
Cytoplasmic	129	198	0.69
Transmembrane Helix	199	221	0.77
Non-Cytoplasmic	222	286	0.46
Transmembrane Helix	287	308	0.68
Cytoplasmic	309	353	0.59